Non-Coding RNA Search

rdbla0123_c1.y1

Sequence:


               
               GCTTTCTTTTACCAAGGCAGACAGAACAGCTGCCTTAGCCTGACAACCGGTTGTCCTCAG
CGCAAATGAACTTCAGCATTGGGAATTTCAGGACAGAAAGGTTCCAAGGGGCTCTGGGAG
TGATGGTGTGTTCTAGGTCATAGGTCATATGTAGAGAAGGAACAGATCAAAGTTAGAGAC
TTGAAAAGGAATATGAAGGAAGAGCAGAGCAGAGAAGAACTTCTGAAAATGGAGTAGAGG
AGAGGCAGTGACCACTTTGAATAGCCCCCCATGCTTGTAGGAAAGAAAGATTAACATGCT
CCGTAACCAGAGTTTCTGGGTTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTCTTTTACCAAGGCAGACAGAACAGCTGCCTTAGCCTGACAACCGGTTGTCCTCAG
CGCAAATGAACTTCAGCATTGGGAATTTCAGGACAGAAAGGTTCCAAGGGGCTCTGGGAG
TGATGGTGTGTTCTAGGTCATAGGTCATATGTAGAGAAGGAACAGATCAAAGTTAGAGAC
TTGAAAAGGAATATGAAGGAAGAGCAGAGCAGAGAAGAACTTCTGAAAATGGAGTAGAGG
AGAGGCAGTGACCACTTTGAATAGCCCCCCATGCTTGTAGGAAAGAAAGATTAACATGCT
CCGTAACCAGAGTTTCTGGGTTACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-90, - strand, RNAz p=0.949611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, - strand, RNAz p=0.949611

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-161, gnl|bosTau2|chr22 (27438553-27438393)
               

               
               1-161, gnl|canFam2|chr20 (30123350-30123160)
               

               
               1-161, gnl|dasNov1|scaffold_1073 (113621-113430)
               

               
               1-161, gnl|echTel1|scaffold_309855 (133041-132829)
               

               
               1-161, gnl|hg17|chr3 (64058534-64058726)
               

               
               1-161, gnl|Hg17|chr3 (64058770-64058616)
               

               
               1-161, gnl|loxAfr1|scaffold_4184 (19823-19618)
               

               
               1-161, gnl|mm7|chr6 (92461990-92462174)
               

               
               1-161, gnl|monDom2|scaffold_5 (10279510-10279718)
               

               
               1-161, gnl|oryCun1|scaffold_202254 (100425-100241)
               

               
               1-161, gnl|panTro1|chrUn_random (24233747-24233555)
               

               
               1-161, gnl|rheMac2|chr2 (72303350-72303158)
               

               
               1-161, gnl|rn3|chr4 (126820151-126820333)
               


               
               162-288, gnl|bosTau2|chr22 (27438258-27438132)
               

               
               162-288, gnl|Hg17|chr3 (64058591-64058476)
               

               
               162-288, gnl|Mm7|chr6 (92462047-92461941)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-161, gnl|bosTau2|chr22 (27438553-27438393)
               

               
               1-161, gnl|canFam2|chr20 (30123350-30123160)
               

               
               1-161, gnl|dasNov1|scaffold_1073 (113621-113430)
               

               
               1-161, gnl|echTel1|scaffold_309855 (133041-132829)
               

               
               1-161, gnl|hg17|chr3 (64058534-64058726)
               

               
               1-161, gnl|Hg17|chr3 (64058770-64058616)
               

               
               1-161, gnl|loxAfr1|scaffold_4184 (19823-19618)
               

               
               1-161, gnl|mm7|chr6 (92461990-92462174)
               

               
               1-161, gnl|monDom2|scaffold_5 (10279510-10279718)
               

               
               1-161, gnl|oryCun1|scaffold_202254 (100425-100241)
               

               
               1-161, gnl|panTro1|chrUn_random (24233747-24233555)
               

               
               1-161, gnl|rheMac2|chr2 (72303350-72303158)
               

               
               1-161, gnl|rn3|chr4 (126820151-126820333)
               


               
               162-288, gnl|bosTau2|chr22 (27438258-27438132)
               

               
               162-288, gnl|Hg17|chr3 (64058591-64058476)
               

               
               162-288, gnl|Mm7|chr6 (92462047-92461941)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	1-161, gnl\|bosTau2\|chr22 (27438553-27438393)
	1-161, gnl\|canFam2\|chr20 (30123350-30123160)
	1-161, gnl\|dasNov1\|scaffold_1073 (113621-113430)
	1-161, gnl\|echTel1\|scaffold_309855 (133041-132829)
	1-161, gnl\|hg17\|chr3 (64058534-64058726)
	1-161, gnl\|Hg17\|chr3 (64058770-64058616)
	1-161, gnl\|loxAfr1\|scaffold_4184 (19823-19618)
	1-161, gnl\|mm7\|chr6 (92461990-92462174)
	1-161, gnl\|monDom2\|scaffold_5 (10279510-10279718)
	1-161, gnl\|oryCun1\|scaffold_202254 (100425-100241)
	1-161, gnl\|panTro1\|chrUn_random (24233747-24233555)
	1-161, gnl\|rheMac2\|chr2 (72303350-72303158)
	1-161, gnl\|rn3\|chr4 (126820151-126820333)

	162-288, gnl\|bosTau2\|chr22 (27438258-27438132)
	162-288, gnl\|Hg17\|chr3 (64058591-64058476)
	162-288, gnl\|Mm7\|chr6 (92462047-92461941)