Non-Coding RNA Search

rdbla0128_a8.y1

Sequence:


               
               AAGAGGAATTTATTTACCTTTGGTCCAAGCTAAAGAACTATCTCAGTATATTCAAAATAA
CATATGAACTATATGAACTCAATAAACACTTGCGCAAATAACATTTATCTTTAAGAAATT
TATTTTGTGTGTATGTTAGGAAATTTGGGGTGCTCTAAAGGATGGGGCCTCAGGGTTGTG
CTACTCTTGCCTGGGACCAAGGGTGGTAGTGAGCCATTGCTCAGACACGTGCATGGCTTC
TTTACCCACCCTGTAAACTCCTTATGGGAAAACAACTTGACTTCTTTAAAAATTAGCCTG
CTCTCTTCAACAGTGAGTCTGACTCGGAAATGAGAAATGAATATCGTGCCACTCACTCCT
TGAAGAAATAATGATATGAATTTTAAAAGTGACAGGTTGAATAATGTTATTACTGAGAAA
ATGATGAAGAAAATCCATTTGTGGATGAGCTTCTCAAGGAGGGGTGGGGCGGAAAAGTGA
ACACCCGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGGAATTTATTTACCTTTGGTCCAAGCTAAAGAACTATCTCAGTATATTCAAAATAA
CATATGAACTATATGAACTCAATAAACACTTGCGCAAATAACATTTATCTTTAAGAAATT
TATTTTGTGTGTATGTTAGGAAATTTGGGGTGCTCTAAAGGATGGGGCCTCAGGGTTGTG
CTACTCTTGCCTGGGACCAAGGGTGGTAGTGAGCCATTGCTCAGACACGTGCATGGCTTC
TTTACCCACCCTGTAAACTCCTTATGGGAAAACAACTTGACTTCTTTAAAAATTAGCCTG
CTCTCTTCAACAGTGAGTCTGACTCGGAAATGAGAAATGAATATCGTGCCACTCACTCCT
TGAAGAAATAATGATATGAATTTTAAAAGTGACAGGTTGAATAATGTTATTACTGAGAAA
ATGATGAAGAAAATCCATTTGTGGATGAGCTTCTCAAGGAGGGGTGGGGCGGAAAAGTGA
ACACCCGGAGGA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               4-167, gnl|bosTau2|chr12 (10946941-10947104)
               

               
               4-167, gnl|canFam2|chr22 (3293218-3293075)
               

               
               4-167, gnl|dasNov1|scaffold_1110 (65263-65075)
               

               
               4-167, gnl|hg17|chr13 (51173831-51174040)
               

               
               4-167, gnl|Hg17|chr13 (51173870-51174024)
               

               
               4-167, gnl|mm7|chr14 (57787420-57787606)
               

               
               4-167, gnl|oryCun1|scaffold_75891 (1251-1047)
               

               
               4-167, gnl|panTro1|chr14_random (17327488-17327697)
               

               
               4-167, gnl|rheMac2|chr17 (30515758-30515967)
               

               
               4-167, gnl|rn3|chr15 (42197937-42198082)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-167, gnl|bosTau2|chr12 (10946941-10947104)
               

               
               4-167, gnl|canFam2|chr22 (3293218-3293075)
               

               
               4-167, gnl|dasNov1|scaffold_1110 (65263-65075)
               

               
               4-167, gnl|hg17|chr13 (51173831-51174040)
               

               
               4-167, gnl|Hg17|chr13 (51173870-51174024)
               

               
               4-167, gnl|mm7|chr14 (57787420-57787606)
               

               
               4-167, gnl|oryCun1|scaffold_75891 (1251-1047)
               

               
               4-167, gnl|panTro1|chr14_random (17327488-17327697)
               

               
               4-167, gnl|rheMac2|chr17 (30515758-30515967)
               

               
               4-167, gnl|rn3|chr15 (42197937-42198082)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	4-167, gnl\|bosTau2\|chr12 (10946941-10947104)
	4-167, gnl\|canFam2\|chr22 (3293218-3293075)
	4-167, gnl\|dasNov1\|scaffold_1110 (65263-65075)
	4-167, gnl\|hg17\|chr13 (51173831-51174040)
	4-167, gnl\|Hg17\|chr13 (51173870-51174024)
	4-167, gnl\|mm7\|chr14 (57787420-57787606)
	4-167, gnl\|oryCun1\|scaffold_75891 (1251-1047)
	4-167, gnl\|panTro1\|chr14_random (17327488-17327697)
	4-167, gnl\|rheMac2\|chr17 (30515758-30515967)
	4-167, gnl\|rn3\|chr15 (42197937-42198082)