Non-Coding RNA Search

rdbla0128_p11.y1

Sequence:


               
               TTAAGAATGCAGTTCCCGGAACCATTTTTTCTCACTGAGTTCTTTCCTTACACCTCTTGG
CTACAGGGTGGGCCAAATCAAATACATATCTATTTTTTTCCTTTAATGTCTGTGCAGTTG
GGTTTTTCATCTTAAGATGGTGGTGCTGATTTGGGTGCTACGTCATCTGTGTTCAAAAGG
ACCAATGCATGGTCTGTATTGCTACCAAAACATTTATTGTAAATATGTGTATAACATATG
TATTATGTATATATGTAATGGGTACCAGGCCAGGTATATATTTTTATTTAGATTCACTTT
TTTCTCAGTCTTCTTTATAGTGTTATGCTTTTCAGTCCCCCCCCCCCCCCCCGATGCTGT
CTGGTACTTAGAACTGTAGTGTCTTCATCATTAATTAAAGAAAACTGTCTAAATGAGTTC
ACGCATATGAATGCTAGTGATCCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGAATGCAGTTCCCGGAACCATTTTTTCTCACTGAGTTCTTTCCTTACACCTCTTGG
CTACAGGGTGGGCCAAATCAAATACATATCTATTTTTTTCCTTTAATGTCTGTGCAGTTG
GGTTTTTCATCTTAAGATGGTGGTGCTGATTTGGGTGCTACGTCATCTGTGTTCAAAAGG
ACCAATGCATGGTCTGTATTGCTACCAAAACATTTATTGTAAATATGTGTATAACATATG
TATTATGTATATATGTAATGGGTACCAGGCCAGGTATATATTTTTATTTAGATTCACTTT
TTTCTCAGTCTTCTTTATAGTGTTATGCTTTTCAGTCCCCCCCCCCCCCCCCGATGCTGT
CTGGTACTTAGAACTGTAGTGTCTTCATCATTAATTAAAGAAAACTGTCTAAATGAGTTC
ACGCATATGAATGCTAGTGATCCTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, + strand, RNAz p=0.941057

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, + strand, RNAz p=0.941057

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               51-277, + strand, RNAmicro p=0.99778

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               51-277, + strand, RNAmicro p=0.99778

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-447, gnl|bosTau2|chr11 (51711827-51711382)
               

               
               1-447, gnl|Hg17|chr2 (227422034-227421591)
               

               
               1-447, gnl|Mm7|chr1 (82448208-82447764)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-447, gnl|bosTau2|chr11 (51711827-51711382)
               

               
               1-447, gnl|Hg17|chr2 (227422034-227421591)
               

               
               1-447, gnl|Mm7|chr1 (82448208-82447764)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	1-447, gnl\|bosTau2\|chr11 (51711827-51711382)
	1-447, gnl\|Hg17\|chr2 (227422034-227421591)
	1-447, gnl\|Mm7\|chr1 (82448208-82447764)