rdbla0138_j23.y1
|
GCCCCCAGGTCTTTTATGGATTAACTCTTCATTGATTCCATACAACAGCAATATAGTTAT
GGCGACCTTCCCGACTTTCAGAAACAGTCACTTGAAAACTAGAGCATCGGTCAGAAAAAG
CTTCAGTGAAGATGTGTTCCAGTCTGTAAAGTCTTTATTGCAGAGCGAGAAGGAACTATG
CAGCGTATCAGCAGAGGACTGTTTAAAGCAGGATGAACATGCCGGTTTGACTGAGGTCAC
ATTTCTAGGTTTTAATGAAGAAACAGATGCTGCTCACATCCAGGATTTGGCTGCAGTTTC
TTTGGAACTTCCAGATCTTCTGAATTCATTGCACTTCTGCAGTCTAAATGAAAATGAAAT
GATTTGTATGAAGGATATAAATAAATCATCAGATATAAACAGTGGCCCTCTAAATCAGAG
TCATCATTCTGGAATGCTTTGTGTCATGAGAGTGTCACCTACCTTACCAAGACTCAGAAT
CGACTTCATCTTTAGTCTCCTAAGTAAATATGCTACGGGTATAAGATACACCCTGGACAC
CTATTTGCATCAGAAGCGCCAACTGGAGGCCGCTAATGAAGATGATGACGACACTAACCA
GT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCCCCAGGTCTTTTATGGATTAACTCTTCATTGATTCCATACAACAGCAATATAGTTAT
GGCGACCTTCCCGACTTTCAGAAACAGTCACTTGAAAACTAGAGCATCGGTCAGAAAAAG
CTTCAGTGAAGATGTGTTCCAGTCTGTAAAGTCTTTATTGCAGAGCGAGAAGGAACTATG
CAGCGTATCAGCAGAGGACTGTTTAAAGCAGGATGAACATGCCGGTTTGACTGAGGTCAC
ATTTCTAGGTTTTAATGAAGAAACAGATGCTGCTCACATCCAGGATTTGGCTGCAGTTTC
TTTGGAACTTCCAGATCTTCTGAATTCATTGCACTTCTGCAGTCTAAATGAAAATGAAAT
GATTTGTATGAAGGATATAAATAAATCATCAGATATAAACAGTGGCCCTCTAAATCAGAG
TCATCATTCTGGAATGCTTTGTGTCATGAGAGTGTCACCTACCTTACCAAGACTCAGAAT
CGACTTCATCTTTAGTCTCCTAAGTAAATATGCTACGGGTATAAGATACACCCTGGACAC
CTATTTGCATCAGAAGCGCCAACTGGAGGCCGCTAATGAAGATGATGACGACACTAACCA
GT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
282-418, gnl|bosTau2|chr12 (3804600-3804736) |
|
282-418, gnl|canFam2|chr22 (11429935-11429726) |
|
282-418, gnl|dasNov1|scaffold_18739 (2860-3071) |
|
282-418, gnl|echTel1|scaffold_321392 (19704-19495) |
|
282-418, gnl|galGal2|chr1 (158583049-158583297) |
|
282-418, gnl|hg17|chr13 (41769165-41769372) |
|
282-418, gnl|Hg17|chr13 (41769182-41769318) |
|
282-418, gnl|mm7|chr14 (73197167-73196960) |
|
282-418, gnl|Mm7|chr14 (73197148-73197012) |
|
282-418, gnl|monDom2|scaffold_64 (4022680-4022867) |
|
282-418, gnl|oryCun1|scaffold_203533 (908-706) |
|
282-418, gnl|panTro1|chr14_random (10838063-10837859) |
|
282-418, gnl|rheMac2|chr17 (21237692-21237899) |
|
282-418, gnl|rn3|chr15 (59689925-59689718) |
|
282-418, gnl|xenTro1|scaffold_381 (770393-770602) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
282-418, gnl|bosTau2|chr12 (3804600-3804736) |
|
282-418, gnl|canFam2|chr22 (11429935-11429726) |
|
282-418, gnl|dasNov1|scaffold_18739 (2860-3071) |
|
282-418, gnl|echTel1|scaffold_321392 (19704-19495) |
|
282-418, gnl|galGal2|chr1 (158583049-158583297) |
|
282-418, gnl|hg17|chr13 (41769165-41769372) |
|
282-418, gnl|Hg17|chr13 (41769182-41769318) |
|
282-418, gnl|mm7|chr14 (73197167-73196960) |
|
282-418, gnl|Mm7|chr14 (73197148-73197012) |
|
282-418, gnl|monDom2|scaffold_64 (4022680-4022867) |
|
282-418, gnl|oryCun1|scaffold_203533 (908-706) |
|
282-418, gnl|panTro1|chr14_random (10838063-10837859) |
|
282-418, gnl|rheMac2|chr17 (21237692-21237899) |
|
282-418, gnl|rn3|chr15 (59689925-59689718) |
|
282-418, gnl|xenTro1|scaffold_381 (770393-770602) |
