Non-Coding RNA Search

rduo419b_p4.y1

Sequence:


               
               CTTGGTCACCAGGAGGATGGATAATGCCTGCTTTTGCTGTCTTGGGCACACCCTGTGTGA
CCTTTCTCAAACCAGTGTCTTATCAGGTCACACCTTGACTCCCAAACCTCCAACGGCTGA
AAAAACTGCCCTTCTGCATAGGGCAGGAGCGATGGCCCTGACTCTGTTATCAGACCAACC
TGGCTTTGCTCCCTTTTCCTGCCATGCAGCAGCTTGCACCCTGTAAATGACTGGGCCTCT
CCCAGCTGCAGTTTCCTCTTGAGGAAAATGGGGATTGTGCTGGTATGACCAAATCGGATT
GACTTTTTTTCCCCCCCCGAATAGCGAGAACAGGTCCTACACTGGGCCACTTTAAGTTTG
TCTCGGCCAGGAATTGAACACAACTTTTTGGCCTCTTGCATAATTCCCATCAATCCTTCA
GTGAAGGACTAGCCCTAGAGAGGAGGGTGTTTCTCCTAAAACACTCAAGGGTAGCCTAGG
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGTCACCAGGAGGATGGATAATGCCTGCTTTTGCTGTCTTGGGCACACCCTGTGTGA
CCTTTCTCAAACCAGTGTCTTATCAGGTCACACCTTGACTCCCAAACCTCCAACGGCTGA
AAAAACTGCCCTTCTGCATAGGGCAGGAGCGATGGCCCTGACTCTGTTATCAGACCAACC
TGGCTTTGCTCCCTTTTCCTGCCATGCAGCAGCTTGCACCCTGTAAATGACTGGGCCTCT
CCCAGCTGCAGTTTCCTCTTGAGGAAAATGGGGATTGTGCTGGTATGACCAAATCGGATT
GACTTTTTTTCCCCCCCCGAATAGCGAGAACAGGTCCTACACTGGGCCACTTTAAGTTTG
TCTCGGCCAGGAATTGAACACAACTTTTTGGCCTCTTGCATAATTCCCATCAATCCTTCA
GTGAAGGACTAGCCCTAGAGAGGAGGGTGTTTCTCCTAAAACACTCAAGGGTAGCCTAGG
T

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-417, - strand, RNAz p=0.989352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-417, - strand, RNAz p=0.989352

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-417, gnl|bosTau2|chr18 (38760008-38759598)
               

               
               1-417, gnl|Hg17|chr19 (50275284-50275999)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-417, gnl|bosTau2|chr18 (38760008-38759598)
               

               
               1-417, gnl|Hg17|chr19 (50275284-50275999)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	1-417, gnl\|bosTau2\|chr18 (38760008-38759598)
	1-417, gnl\|Hg17\|chr19 (50275284-50275999)