Non-Coding RNA Search

rduo432b_k1.y1

Sequence:


               
               CGGATCAGACACTACAGAATCCATCGCCTTGACAACGGCTGGCTGTACATCTCACCACGC
CTCACCTTCCCCTCACTCCAGGCCCTGGTGGACCATTACTCCGAGCTGGCGGATGACATC
TGCTGCCTCCTCAAGGAACCCTGTGCCCTGCAGAAGGCCAGCCCACTCCCTGGCAAGGCC
ATACCCCTACCCGTGACTGTGCAGACGACACCACTCAATTGGAAAGAGCTGGACAGCTCT
TTCCTGTTCTCTGAAGCATCTGCCACAGGGGAGGAGTCTCTCCTCAGTGAGGGGCTCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATCAGACACTACAGAATCCATCGCCTTGACAACGGCTGGCTGTACATCTCACCACGC
CTCACCTTCCCCTCACTCCAGGCCCTGGTGGACCATTACTCCGAGCTGGCGGATGACATC
TGCTGCCTCCTCAAGGAACCCTGTGCCCTGCAGAAGGCCAGCCCACTCCCTGGCAAGGCC
ATACCCCTACCCGTGACTGTGCAGACGACACCACTCAATTGGAAAGAGCTGGACAGCTCT
TTCCTGTTCTCTGAAGCATCTGCCACAGGGGAGGAGTCTCTCCTCAGTGAGGGGCTCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876252|ref|XP_586343.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876252|ref|XP_586343.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               96-236, gnl|bosTau2|chr13 (44747356-44747216)
               

               
               96-236, gnl|canFam2|chr24 (28368539-28368694)
               

               
               96-236, gnl|dasNov1|scaffold_9909 (2294-2447)
               

               
               96-236, gnl|echTel1|scaffold_162859 (10990-10836)
               

               
               96-236, gnl|hg17|chr20 (34676119-34676274)
               

               
               96-236, gnl|Hg17|chr20 (34676262-34676122)
               

               
               96-236, gnl|loxAfr1|scaffold_9704 (30000-30155)
               

               
               96-236, gnl|mm7|chr2 (156615764-156615919)
               

               
               96-236, gnl|Mm7|chr2 (156615907-156615767)
               

               
               96-236, gnl|monDom2|scaffold_6 (10364159-10364008)
               

               
               96-236, gnl|oryCun1|scaffold_97283 (6366-6211)
               

               
               96-236, gnl|panTro1|chr21 (36912551-36912706)
               

               
               96-236, gnl|rheMac2|chr10 (27869670-27869515)
               

               
               96-236, gnl|rn3|chr3 (147184307-147184462)
               

               
               96-236, gnl|tetNig1|chr11 (9162025-9161874)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-236, gnl|bosTau2|chr13 (44747356-44747216)
               

               
               96-236, gnl|canFam2|chr24 (28368539-28368694)
               

               
               96-236, gnl|dasNov1|scaffold_9909 (2294-2447)
               

               
               96-236, gnl|echTel1|scaffold_162859 (10990-10836)
               

               
               96-236, gnl|hg17|chr20 (34676119-34676274)
               

               
               96-236, gnl|Hg17|chr20 (34676262-34676122)
               

               
               96-236, gnl|loxAfr1|scaffold_9704 (30000-30155)
               

               
               96-236, gnl|mm7|chr2 (156615764-156615919)
               

               
               96-236, gnl|Mm7|chr2 (156615907-156615767)
               

               
               96-236, gnl|monDom2|scaffold_6 (10364159-10364008)
               

               
               96-236, gnl|oryCun1|scaffold_97283 (6366-6211)
               

               
               96-236, gnl|panTro1|chr21 (36912551-36912706)
               

               
               96-236, gnl|rheMac2|chr10 (27869670-27869515)
               

               
               96-236, gnl|rn3|chr3 (147184307-147184462)
               

               
               96-236, gnl|tetNig1|chr11 (9162025-9161874)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	96-236, gnl\|bosTau2\|chr13 (44747356-44747216)
	96-236, gnl\|canFam2\|chr24 (28368539-28368694)
	96-236, gnl\|dasNov1\|scaffold_9909 (2294-2447)
	96-236, gnl\|echTel1\|scaffold_162859 (10990-10836)
	96-236, gnl\|hg17\|chr20 (34676119-34676274)
	96-236, gnl\|Hg17\|chr20 (34676262-34676122)
	96-236, gnl\|loxAfr1\|scaffold_9704 (30000-30155)
	96-236, gnl\|mm7\|chr2 (156615764-156615919)
	96-236, gnl\|Mm7\|chr2 (156615907-156615767)
	96-236, gnl\|monDom2\|scaffold_6 (10364159-10364008)
	96-236, gnl\|oryCun1\|scaffold_97283 (6366-6211)
	96-236, gnl\|panTro1\|chr21 (36912551-36912706)
	96-236, gnl\|rheMac2\|chr10 (27869670-27869515)
	96-236, gnl\|rn3\|chr3 (147184307-147184462)
	96-236, gnl\|tetNig1\|chr11 (9162025-9161874)