Non-Coding RNA Search

rebs03c_f5.y1

Sequence:


               
               TGGAGACACCAGTCTGCTCGCAGCCCCGGCTTGATTCAGACCTTCCAACCCAGCGTGCTC
CTTTCTCTGCCAGCCCCTGACCTTGTGGGCGTCTCCAGGTAGGCGGGGGAATGGTTTAAT
CTCTGCAGTCGTCACCTCCTCTGAGGCCGAAGGCAAGCTCCGTGGCCAGTGTGGCAGGAT
GTGGCTGCAGAGCTGGGGCCTCCAGGAGGGGATCTGGGGGTTCCCCCATCCTGGCCAGCA
GGGGGCGCACGACGCAGGTTCCTGCCGCAGTGAAGCCCCTCACCTGCCCAGCTGTGGGAC
CCACCTCTTCTTCAGGTTCTCAAGTTTGTCATAGAGTCCAGGTTTGTTGGTGGCTTCGAC
CACGTTGGGCGTTTTCACCGCCTCCTCCATCAAGGCCTGGGGAGAGAAGGGACGCCAAGG
GCTCAGCAGCCCCGTCCTCTCCAACAGAAAGTGCCCGGGCAGGCGCGGGAGTTCACCTTG
AACTCCTGGTCGATGTCGTCAAAGCGGGTGGAGTCCTCCGGCAGCTGCGCGCGGATGTCT
TCGGAGCCGATGAAGATGCTCTCCAGGTGGCTCCAGGTTCTCTGGACTTCGAACCAGATG
GAGATGACCGAGTCCGCCGTGGACAGCTTCTGCTGCCAGCTCGTCACCTCCTTCAGGAAG
TGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGACACCAGTCTGCTCGCAGCCCCGGCTTGATTCAGACCTTCCAACCCAGCGTGCTC
CTTTCTCTGCCAGCCCCTGACCTTGTGGGCGTCTCCAGGTAGGCGGGGGAATGGTTTAAT
CTCTGCAGTCGTCACCTCCTCTGAGGCCGAAGGCAAGCTCCGTGGCCAGTGTGGCAGGAT
GTGGCTGCAGAGCTGGGGCCTCCAGGAGGGGATCTGGGGGTTCCCCCATCCTGGCCAGCA
GGGGGCGCACGACGCAGGTTCCTGCCGCAGTGAAGCCCCTCACCTGCCCAGCTGTGGGAC
CCACCTCTTCTTCAGGTTCTCAAGTTTGTCATAGAGTCCAGGTTTGTTGGTGGCTTCGAC
CACGTTGGGCGTTTTCACCGCCTCCTCCATCAAGGCCTGGGGAGAGAAGGGACGCCAAGG
GCTCAGCAGCCCCGTCCTCTCCAACAGAAAGTGCCCGGGCAGGCGCGGGAGTTCACCTTG
AACTCCTGGTCGATGTCGTCAAAGCGGGTGGAGTCCTCCGGCAGCTGCGCGCGGATGTCT
TCGGAGCCGATGAAGATGCTCTCCAGGTGGCTCCAGGTTCTCTGGACTTCGAACCAGATG
GAGATGACCGAGTCCGCCGTGGACAGCTTCTGCTGCCAGCTCGTCACCTCCTTCAGGAAG
TGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               543-665, - strand, RNAz p=0.936714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-665, - strand, RNAz p=0.936714

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-665, gnl|bosTau2|chr19 (45917364-45918064)
               

               
               1-665, gnl|Hg17|chr17 (74014616-74015323)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-665, gnl|bosTau2|chr19 (45917364-45918064)
               

               
               1-665, gnl|Hg17|chr17 (74014616-74015323)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-665, gnl\|bosTau2\|chr19 (45917364-45918064)
	1-665, gnl\|Hg17\|chr17 (74014616-74015323)