Non-Coding RNA Search

rebs05c_g24.y1

Sequence:


               
               AATACTTTTGAAAACACTTTCAAAGAAAAAATATATATATAAAATAAAAGGCTCCTTATT
TTGAAAATGGGGAAGAATCCATCAGCTGCCTTTGGAGTGACAGTATTACATGAACTGCAA
ATTGCCATTTGCTTTGGAAGGATTACTCAAAGTTAAAAAGCAGAAAAGCTGGGTTTGGAA
GATTGCCCTTTCTTGAGTCCATTCCAGCTTTACTGGGTTTTTCTAGAACACTGTCAGCAC
TTGCCTGACTGTCCTTGTTCATTAGAGTTGCCAAATATCCTCCATAAAAATACCACCACC
ATCAGACAGGTAGGGAGAGAGGGGGAGCTAGCCCTCTGTCCTTCTCAGGGAGCTTAGCCT
TCTGCCATTTTCAACAAAATACCTAATGTTAATAACCTCACCTCTTAGGTGCAAACAGAT
ACCCTGGCTTGCGAAATTATTCACATTGCAAAAGGACCTCTTCCATATGAAAAGGATCAC
AAAATCTCTTTAAACTGCATTTGTTTGCCAACAATAAAAATATTTTCCAGAGGGGAGGAA
GTAACAGTTGAAGTAGAATTAATCGGAAATTAATATAAAGCATATTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATACTTTTGAAAACACTTTCAAAGAAAAAATATATATATAAAATAAAAGGCTCCTTATT
TTGAAAATGGGGAAGAATCCATCAGCTGCCTTTGGAGTGACAGTATTACATGAACTGCAA
ATTGCCATTTGCTTTGGAAGGATTACTCAAAGTTAAAAAGCAGAAAAGCTGGGTTTGGAA
GATTGCCCTTTCTTGAGTCCATTCCAGCTTTACTGGGTTTTTCTAGAACACTGTCAGCAC
TTGCCTGACTGTCCTTGTTCATTAGAGTTGCCAAATATCCTCCATAAAAATACCACCACC
ATCAGACAGGTAGGGAGAGAGGGGGAGCTAGCCCTCTGTCCTTCTCAGGGAGCTTAGCCT
TCTGCCATTTTCAACAAAATACCTAATGTTAATAACCTCACCTCTTAGGTGCAAACAGAT
ACCCTGGCTTGCGAAATTATTCACATTGCAAAAGGACCTCTTCCATATGAAAAGGATCAC
AAAATCTCTTTAAACTGCATTTGTTTGCCAACAATAAAAATATTTTCCAGAGGGGAGGAA
GTAACAGTTGAAGTAGAATTAATCGGAAATTAATATAAAGCATATTTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               293-399, - strand, RNAz p=0.543081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-399, - strand, RNAz p=0.543081

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               139-476, gnl|bosTau2|chr8 (24436593-24436927)
               

               
               139-476, gnl|canFam2|chr1 (84962572-84962244)
               

               
               139-476, gnl|dasNov1|scaffold_30855 (8300-8651)
               

               
               139-476, gnl|echTel1|scaffold_230032 (13438-13108)
               

               
               139-476, gnl|hg17|chr9 (76464940-76465296)
               

               
               139-476, gnl|Hg17|chr9 (76465295-76464970)
               

               
               139-476, gnl|mm7|chr19 (16916172-16915866)
               

               
               139-476, gnl|Mm7|chr19 (16915858-16916170)
               

               
               139-476, gnl|oryCun1|scaffold_199663 (43137-42806)
               

               
               139-476, gnl|panTro1|chr11_random (39376484-39376840)
               

               
               139-476, gnl|rheMac2|chr15 (85367260-85367627)
               

               
               139-476, gnl|rn3|chr1 (220882571-220882271)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-476, gnl|bosTau2|chr8 (24436593-24436927)
               

               
               139-476, gnl|canFam2|chr1 (84962572-84962244)
               

               
               139-476, gnl|dasNov1|scaffold_30855 (8300-8651)
               

               
               139-476, gnl|echTel1|scaffold_230032 (13438-13108)
               

               
               139-476, gnl|hg17|chr9 (76464940-76465296)
               

               
               139-476, gnl|Hg17|chr9 (76465295-76464970)
               

               
               139-476, gnl|mm7|chr19 (16916172-16915866)
               

               
               139-476, gnl|Mm7|chr19 (16915858-16916170)
               

               
               139-476, gnl|oryCun1|scaffold_199663 (43137-42806)
               

               
               139-476, gnl|panTro1|chr11_random (39376484-39376840)
               

               
               139-476, gnl|rheMac2|chr15 (85367260-85367627)
               

               
               139-476, gnl|rn3|chr1 (220882571-220882271)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	139-476, gnl\|bosTau2\|chr8 (24436593-24436927)
	139-476, gnl\|canFam2\|chr1 (84962572-84962244)
	139-476, gnl\|dasNov1\|scaffold_30855 (8300-8651)
	139-476, gnl\|echTel1\|scaffold_230032 (13438-13108)
	139-476, gnl\|hg17\|chr9 (76464940-76465296)
	139-476, gnl\|Hg17\|chr9 (76465295-76464970)
	139-476, gnl\|mm7\|chr19 (16916172-16915866)
	139-476, gnl\|Mm7\|chr19 (16915858-16916170)
	139-476, gnl\|oryCun1\|scaffold_199663 (43137-42806)
	139-476, gnl\|panTro1\|chr11_random (39376484-39376840)
	139-476, gnl\|rheMac2\|chr15 (85367260-85367627)
	139-476, gnl\|rn3\|chr1 (220882571-220882271)