Non-Coding RNA Search

rebs05c_m1.y1

Sequence:


               
               CTTCTTTTTTTCTTTTTTTTACTGACTTACTGAACTTATGAAACCATGGCAGAAGGAGAG
ACAAAGTCACCTGGACCCAAAAAGTGTGGTCCCTATATCTCATCTGTGACTAGCCAGAGT
GTGAACTTGATGATTCGAGGAGTAGTCCTCTTTTTTATTGGTGTATTTCTTGCATTAGTG
TTAAATTTGCTTCAGATTCAGAGAAACGTGACGCTCTTTCCACCGGATGTGATTGCAAGC
ATCTTTTCTTCGGCATGGTGGGTACCACCGTGCTGTGGCACAGCTTCAGCTGTGATTGGG
TTATTATACCCCTGCATTGACAGGCATCTAGGAGAACCACATAAATTTAAAAGAGAATGG
TCCAGTGTAATGCGGTGCGTAGCCGTCTTTGTTGGTATAAATCACGCCAGCGCTAAAGTG
GATTTTGATAACAACATACAGTTGTCTCTCACACTGGCTGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTTTTTTCTTTTTTTTACTGACTTACTGAACTTATGAAACCATGGCAGAAGGAGAG
ACAAAGTCACCTGGACCCAAAAAGTGTGGTCCCTATATCTCATCTGTGACTAGCCAGAGT
GTGAACTTGATGATTCGAGGAGTAGTCCTCTTTTTTATTGGTGTATTTCTTGCATTAGTG
TTAAATTTGCTTCAGATTCAGAGAAACGTGACGCTCTTTCCACCGGATGTGATTGCAAGC
ATCTTTTCTTCGGCATGGTGGGTACCACCGTGCTGTGGCACAGCTTCAGCTGTGATTGGG
TTATTATACCCCTGCATTGACAGGCATCTAGGAGAACCACATAAATTTAAAAGAGAATGG
TCCAGTGTAATGCGGTGCGTAGCCGTCTTTGTTGGTATAAATCACGCCAGCGCTAAAGTG
GATTTTGATAACAACATACAGTTGTCTCTCACACTGGCTGCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53759168|gb|AAS99653.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53759168|gb|AAS99653.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               162-294, + strand, RNAz p=0.82828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-294, + strand, RNAz p=0.82828

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-294, gnl|bosTau2|chr18 (40383132-40383423)
               

               
               2-294, gnl|Hg17|chr2 (118570322-118570611)
               

               
               2-294, gnl|Mm7|chr1 (121190660-121190378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-294, gnl|bosTau2|chr18 (40383132-40383423)
               

               
               2-294, gnl|Hg17|chr2 (118570322-118570611)
               

               
               2-294, gnl|Mm7|chr1 (121190660-121190378)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	2-294, gnl\|bosTau2\|chr18 (40383132-40383423)
	2-294, gnl\|Hg17\|chr2 (118570322-118570611)
	2-294, gnl\|Mm7\|chr1 (121190660-121190378)