Non-Coding RNA Search

rebs07c_c17.y1

Sequence:


               
               CCCACTGCCCCGCCCTGCCCGCCTGCCGCCCAGGCCACGTGCTGCACGTCCTGCGGGGGA
ACAGCCAGCGGCGCCTGTGGCTGCAGAGGGCACAGGTGGATGCCCTGCTCTACGAAGGCC
CTGGGGCCCAGCCGTAGGCCCAGCCAGGCCCTGGGCCAAGGGCTTTCTGGAGACACTTTC
TGTGGTGCTCTTCTGGGCCTCGTCCCTCCTCAGGCCTCGGCCACTGGCCACCCTGCCCCC
CCTGCCCCCCGAGGAGTCCTGCGGGCAGGGGTGGGTCTGCCCTCCAGAGAAGACTCTCTG
CTCAGGCCAGCCCACCCCATCCTGGGCACCAGACCCTTGCCAGGGTGAGCACGCCTGTCC
TCAAAAGGACCCTCCCCTCCCCCTTCAGCCCTCTTCCCACCCTGGCACAGGCCCCAGCTC
CTGCCGTGCTCCCCAGAGTTGTCCAGGTGGACAGCCAAAGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACTGCCCCGCCCTGCCCGCCTGCCGCCCAGGCCACGTGCTGCACGTCCTGCGGGGGA
ACAGCCAGCGGCGCCTGTGGCTGCAGAGGGCACAGGTGGATGCCCTGCTCTACGAAGGCC
CTGGGGCCCAGCCGTAGGCCCAGCCAGGCCCTGGGCCAAGGGCTTTCTGGAGACACTTTC
TGTGGTGCTCTTCTGGGCCTCGTCCCTCCTCAGGCCTCGGCCACTGGCCACCCTGCCCCC
CCTGCCCCCCGAGGAGTCCTGCGGGCAGGGGTGGGTCTGCCCTCCAGAGAAGACTCTCTG
CTCAGGCCAGCCCACCCCATCCTGGGCACCAGACCCTTGCCAGGGTGAGCACGCCTGTCC
TCAAAAGGACCCTCCCCTCCCCCTTCAGCCCTCTTCCCACCCTGGCACAGGCCCCAGCTC
CTGCCGTGCTCCCCAGAGTTGTCCAGGTGGACAGCCAAAGAGGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-224, - strand, RNAz p=0.709783
               

               
               81-246, - strand, RNAz p=0.999631

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-224, - strand, RNAz p=0.709783
               

               
               81-246, - strand, RNAz p=0.999631

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               83-194, + strand, RNAmicro p=0.99876

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               83-194, + strand, RNAmicro p=0.99876

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152339, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152339, -

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-246, gnl|bosTau2|chr18 (15466683-15466441)
               

               
               1-246, gnl|canFam2|chr5 (66875543-66875235)
               

               
               1-246, gnl|hg17|chr16 (88291188-88291522)
               

               
               1-246, gnl|loxAfr1|scaffold_25143 (25908-25722)
               

               
               1-246, gnl|mm7|chr8 (121874289-121874617)
               

               
               1-246, gnl|Mm7|chr8 (121874474-121874235)
               

               
               1-246, gnl|monDom2|scaffold_23 (6126519-6126193)
               

               
               1-246, gnl|panTro1|chr18 (83312946-83313280)
               

               
               1-246, gnl|rheMac2|chr20 (87821589-87821925)
               

               
               1-246, gnl|rn3|chr19 (53559083-53559413)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr18 (15466683-15466441)
               

               
               1-246, gnl|canFam2|chr5 (66875543-66875235)
               

               
               1-246, gnl|hg17|chr16 (88291188-88291522)
               

               
               1-246, gnl|loxAfr1|scaffold_25143 (25908-25722)
               

               
               1-246, gnl|mm7|chr8 (121874289-121874617)
               

               
               1-246, gnl|Mm7|chr8 (121874474-121874235)
               

               
               1-246, gnl|monDom2|scaffold_23 (6126519-6126193)
               

               
               1-246, gnl|panTro1|chr18 (83312946-83313280)
               

               
               1-246, gnl|rheMac2|chr20 (87821589-87821925)
               

               
               1-246, gnl|rn3|chr19 (53559083-53559413)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-224, - strand, RNAz p=0.709783
	81-246, - strand, RNAz p=0.999631

	1-246, gnl\|bosTau2\|chr18 (15466683-15466441)
	1-246, gnl\|canFam2\|chr5 (66875543-66875235)
	1-246, gnl\|hg17\|chr16 (88291188-88291522)
	1-246, gnl\|loxAfr1\|scaffold_25143 (25908-25722)
	1-246, gnl\|mm7\|chr8 (121874289-121874617)
	1-246, gnl\|Mm7\|chr8 (121874474-121874235)
	1-246, gnl\|monDom2\|scaffold_23 (6126519-6126193)
	1-246, gnl\|panTro1\|chr18 (83312946-83313280)
	1-246, gnl\|rheMac2\|chr20 (87821589-87821925)
	1-246, gnl\|rn3\|chr19 (53559083-53559413)