Non-Coding RNA Search

rebs07c_l18.y1

Sequence:


               
               TCGATGAAATGCTAGCTTGGCTTTCCACAGGCTGCCTGCCCGAATGCAGAAACTAGGCGA
GTTCTCTCGCACGCTTTGTAACATTGCTTGTTATAATGGGAGTGTGCTTGTGATATTGTT
GATGTATTTAACTAGAAGAGTGAGAGTGACTGTGTAGACCCAATAGACCCAATTAGCTCC
CCTTTTTTCCTCCTAAATTTGATTATGAACACAGTAGTCTGTTTCTTTTTTGAAACACGC
TAGGCATTTTATTTGCTCTTTATTGGCGTCTAGGGGTTTTAAGCAGCTGAGTGTGTTGGA
GACTGGCATTTAAGGGGTGCAGGTGGATGCCCAAAACTGCTCAGTGTTGGGGTCCTCAGA
GGAGAGGGTACGCTGGAGCTTTGGGCTGATCGTCTCTGCTTTGGAGAAGCCGAGTGAGGA
CATGGGTATTATTTTTAAACTTTTGTCTTAGTTTTTATCTCAGATATTCATCGGCCATCT
CCCGGATGCCCCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGATGAAATGCTAGCTTGGCTTTCCACAGGCTGCCTGCCCGAATGCAGAAACTAGGCGA
GTTCTCTCGCACGCTTTGTAACATTGCTTGTTATAATGGGAGTGTGCTTGTGATATTGTT
GATGTATTTAACTAGAAGAGTGAGAGTGACTGTGTAGACCCAATAGACCCAATTAGCTCC
CCTTTTTTCCTCCTAAATTTGATTATGAACACAGTAGTCTGTTTCTTTTTTGAAACACGC
TAGGCATTTTATTTGCTCTTTATTGGCGTCTAGGGGTTTTAAGCAGCTGAGTGTGTTGGA
GACTGGCATTTAAGGGGTGCAGGTGGATGCCCAAAACTGCTCAGTGTTGGGGTCCTCAGA
GGAGAGGGTACGCTGGAGCTTTGGGCTGATCGTCTCTGCTTTGGAGAAGCCGAGTGAGGA
CATGGGTATTATTTTTAAACTTTTGTCTTAGTTTTTATCTCAGATATTCATCGGCCATCT
CCCGGATGCCCCAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-430, + strand, RNAz p=0.990259

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-430, + strand, RNAz p=0.990259

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               109-430, gnl|bosTau2|chr5 (40045934-40046240)
               

               
               109-430, gnl|Hg17|chr12 (102672039-102671725)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-430, gnl|bosTau2|chr5 (40045934-40046240)
               

               
               109-430, gnl|Hg17|chr12 (102672039-102671725)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	109-430, gnl\|bosTau2\|chr5 (40045934-40046240)
	109-430, gnl\|Hg17\|chr12 (102672039-102671725)