Non-Coding RNA Search

rebs08c_a10.y1

Sequence:


               
               AACATAACTGTAGTAGCCTCCGTTGGCAGCTTTTTAGGTACCCATTAATCTCAATAGGAA
AGCCGCAGCCTCGCCCACCCAGTCTCTGAAGTTTGGATGTCACTACTGTGTACAATAAAA
ATTGTATATTCATGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATAACTGTAGTAGCCTCCGTTGGCAGCTTTTTAGGTACCCATTAATCTCAATAGGAA
AGCCGCAGCCTCGCCCACCCAGTCTCTGAAGTTTGGATGTCACTACTGTGTACAATAAAA
ATTGTATATTCATGAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-136, gnl|bosTau2|chr16 (9761849-9761713)
               

               
               1-136, gnl|canFam2|chr38 (16223116-16223901)
               

               
               1-136, gnl|dasNov1|scaffold_2014 (52737-51973)
               

               
               1-136, gnl|echTel1|scaffold_276408 (10162-9390)
               

               
               1-136, gnl|galGal2|chr3 (15878275-15877515)
               

               
               1-136, gnl|hg17|chr1 (214669178-214669943)
               

               
               1-136, gnl|Hg17|chr1 (214669749-214669885)
               

               
               1-136, gnl|loxAfr1|scaffold_48 (140814-140048)
               

               
               1-136, gnl|mm7|chr1 (186407993-186407229)
               

               
               1-136, gnl|Mm7|chr1 (186407420-186407284)
               

               
               1-136, gnl|monDom2|scaffold_13 (23828606-23829366)
               

               
               1-136, gnl|panTro1|chr1 (198404091-198404856)
               

               
               1-136, gnl|rheMac2|chr1 (152323338-152322573)
               

               
               1-136, gnl|rn3|chr13 (103182850-103182076)
               

               
               1-136, gnl|xenTro1|scaffold_39 (1623865-1624470)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr16 (9761849-9761713)
               

               
               1-136, gnl|canFam2|chr38 (16223116-16223901)
               

               
               1-136, gnl|dasNov1|scaffold_2014 (52737-51973)
               

               
               1-136, gnl|echTel1|scaffold_276408 (10162-9390)
               

               
               1-136, gnl|galGal2|chr3 (15878275-15877515)
               

               
               1-136, gnl|hg17|chr1 (214669178-214669943)
               

               
               1-136, gnl|Hg17|chr1 (214669749-214669885)
               

               
               1-136, gnl|loxAfr1|scaffold_48 (140814-140048)
               

               
               1-136, gnl|mm7|chr1 (186407993-186407229)
               

               
               1-136, gnl|Mm7|chr1 (186407420-186407284)
               

               
               1-136, gnl|monDom2|scaffold_13 (23828606-23829366)
               

               
               1-136, gnl|panTro1|chr1 (198404091-198404856)
               

               
               1-136, gnl|rheMac2|chr1 (152323338-152322573)
               

               
               1-136, gnl|rn3|chr13 (103182850-103182076)
               

               
               1-136, gnl|xenTro1|scaffold_39 (1623865-1624470)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-136, gnl\|bosTau2\|chr16 (9761849-9761713)
	1-136, gnl\|canFam2\|chr38 (16223116-16223901)
	1-136, gnl\|dasNov1\|scaffold_2014 (52737-51973)
	1-136, gnl\|echTel1\|scaffold_276408 (10162-9390)
	1-136, gnl\|galGal2\|chr3 (15878275-15877515)
	1-136, gnl\|hg17\|chr1 (214669178-214669943)
	1-136, gnl\|Hg17\|chr1 (214669749-214669885)
	1-136, gnl\|loxAfr1\|scaffold_48 (140814-140048)
	1-136, gnl\|mm7\|chr1 (186407993-186407229)
	1-136, gnl\|Mm7\|chr1 (186407420-186407284)
	1-136, gnl\|monDom2\|scaffold_13 (23828606-23829366)
	1-136, gnl\|panTro1\|chr1 (198404091-198404856)
	1-136, gnl\|rheMac2\|chr1 (152323338-152322573)
	1-136, gnl\|rn3\|chr13 (103182850-103182076)
	1-136, gnl\|xenTro1\|scaffold_39 (1623865-1624470)