Non-Coding RNA Search

rebs08c_e11.y1

Sequence:


               
               TAACATTTACTAAACAATCCCCATTTTATGGATGAGGAAACTGAGGACAAGAGAAGTCAA
TAACTAAACTCAAGGTGATCATATAGGGTGATTAGTTTTTTCCTTTATTAAATAAAATGC
TAAATAAAACCGAGTTTAAATTATGTGTGGGTAATTCACCCATAGTCCCAAGAAATGGAA
CCACAACTAGGACTAGAAGATGGCCATACAAGAGAATGTCAGCTTTATCTAGCCAAGAAT
GGTTTGTCTCAGAGAAGGGGCTCCTTGTCATCAGTATTAGCCTGCCATGGCTGCCTAGTT
TATTTGAACTGGGATGGAGAGGCAGTTGTCTAGAGCAATGATTCTCAAACCTTAGCATGT
TATTCAGAATTACCAGAAGGGACTTATTGACATACAGACTGggagttccctggtggccta
gcagttaaggatctggtgttgtcactgctggggcacgggttcagtccctggccctgggaa
cttccgcatgcTGGAGCAGCCAAAAAAAGAACCCCCAAAACAAACAAACAAAAAAACCAC
AGACTGATGCGCCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACATTTACTAAACAATCCCCATTTTATGGATGAGGAAACTGAGGACAAGAGAAGTCAA
TAACTAAACTCAAGGTGATCATATAGGGTGATTAGTTTTTTCCTTTATTAAATAAAATGC
TAAATAAAACCGAGTTTAAATTATGTGTGGGTAATTCACCCATAGTCCCAAGAAATGGAA
CCACAACTAGGACTAGAAGATGGCCATACAAGAGAATGTCAGCTTTATCTAGCCAAGAAT
GGTTTGTCTCAGAGAAGGGGCTCCTTGTCATCAGTATTAGCCTGCCATGGCTGCCTAGTT
TATTTGAACTGGGATGGAGAGGCAGTTGTCTAGAGCAATGATTCTCAAACCTTAGCATGT
TATTCAGAATTACCAGAAGGGACTTATTGACATACAGACTGggagttccctggtggccta
gcagttaaggatctggtgttgtcactgctggggcacgggttcagtccctggccctgggaa
cttccgcatgcTGGAGCAGCCAAAAAAAGAACCCCCAAAACAAACAAACAAAAAAACCAC
AGACTGATGCGCCCCCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               113-231, - strand, RNAz p=0.991895

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-231, - strand, RNAz p=0.991895

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-348, gnl|bosTau2|chr9 (19656967-19656613)
               

               
               1-348, gnl|Hg17|chr6 (112302587-112302937)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr9 (19656967-19656613)
               

               
               1-348, gnl|Hg17|chr6 (112302587-112302937)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-348, gnl\|bosTau2\|chr9 (19656967-19656613)
	1-348, gnl\|Hg17\|chr6 (112302587-112302937)