Non-Coding RNA Search

rebs08c_e23.y1

Sequence:


               
               TCCCATCCCCACTCTGCCCAGCTCTCATCACTGTCAGACCCACCAGAGCTGAGGGCGGAG
GGACTGGGGGCTGGGGCCGCCTGGGTCCCCATCCCCCTCTCTGTGCCTCGGTCTCCTCCC
TTCCGTGGTGGGCGGGGGGGGAAGCGCCATTCTTAACCTACCTCGTTTGGGGGAGGGGTG
GGATGGGGGACCAGAGTGCTGTAAGGTGCTGTGGGATCTGCGGAGGAAGCAGTGGGGGCT
GGGGGATGGTCCCCTGGCTCCCACCTCCCAGCACCGCCTCTCCCAGGTCTCCCAGTCCCT
CTCCCTGCTAATACCCACCTCTGATCCATGATTACTCTTCATCACCCCTAAATCAGGGGT
GCATGGAGGGCTGACCCTGGGAGCCAGGAAGACCTCAGACCCTGGAGCCCCCAGGCCCAG
TTTCCCGGCTGCTTGCCCCTCAGATGGGATGCTTGGCCCTCAGACTTGGGGGAGGCACCC
CGACATTAATCTTCCTGATCTTGAGTCTAAGCCAGTCTGTGACCTCAATATGGTTATCAT
CAGTGCAGGCTGAAGTAGTGGGGGAGGATGGGGGCCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCATCCCCACTCTGCCCAGCTCTCATCACTGTCAGACCCACCAGAGCTGAGGGCGGAG
GGACTGGGGGCTGGGGCCGCCTGGGTCCCCATCCCCCTCTCTGTGCCTCGGTCTCCTCCC
TTCCGTGGTGGGCGGGGGGGGAAGCGCCATTCTTAACCTACCTCGTTTGGGGGAGGGGTG
GGATGGGGGACCAGAGTGCTGTAAGGTGCTGTGGGATCTGCGGAGGAAGCAGTGGGGGCT
GGGGGATGGTCCCCTGGCTCCCACCTCCCAGCACCGCCTCTCCCAGGTCTCCCAGTCCCT
CTCCCTGCTAATACCCACCTCTGATCCATGATTACTCTTCATCACCCCTAAATCAGGGGT
GCATGGAGGGCTGACCCTGGGAGCCAGGAAGACCTCAGACCCTGGAGCCCCCAGGCCCAG
TTTCCCGGCTGCTTGCCCCTCAGATGGGATGCTTGGCCCTCAGACTTGGGGGAGGCACCC
CGACATTAATCTTCCTGATCTTGAGTCTAAGCCAGTCTGTGACCTCAATATGGTTATCAT
CAGTGCAGGCTGAAGTAGTGGGGGAGGATGGGGGCCAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-436, - strand, RNAz p=0.996336

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-436, - strand, RNAz p=0.996336

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               40-200, + strand, RNAmicro p=0.999859
               

               
               211-297, + strand, RNAmicro p=0.999716
               

               
               366-462, - strand, RNAmicro p=0.980288

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               40-200, + strand, RNAmicro p=0.999859
               

               
               211-297, + strand, RNAmicro p=0.999716
               

               
               366-462, - strand, RNAmicro p=0.980288

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               190-167, UI-E-EJ1-ajo-l-07-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ185047.1|), blast E-value=0, identity=91.02% 
               

               
               190-167, UI-H-EU1-azy-e-06-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone 
(gb|BQ445911.1|), blast E-value=7e-40, identity=90% 
               

               
               190-167, AGENCOURT_8867898 NIH_MGC_42 Homo sapiens cDNA clone IMAGE 
(gb|BU501779.1|), blast E-value=0, identity=91.02% 
               

               
               190-167, UI-E-CL1-afd-h-11-0-UI.s1 UI-E-CL1 Homo sapiens cDNA clone 
(gb|BU729325.1|), blast E-value=4.99997e-41, identity=90.14% 
               

               
               192-167, UI-CF-FN0-afs-g-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB853161.1|), blast E-value=0, identity=90.73% 
               

               
               211-436, BovGen_13348 normal cattle brain Bos taurus cDNA clone 
(gb|CO885023.1|), blast E-value=0, identity=93.81%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               190-167, UI-E-EJ1-ajo-l-07-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ185047.1|), blast E-value=0, identity=91.02% 
               

               
               190-167, UI-H-EU1-azy-e-06-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone 
(gb|BQ445911.1|), blast E-value=7e-40, identity=90% 
               

               
               190-167, AGENCOURT_8867898 NIH_MGC_42 Homo sapiens cDNA clone IMAGE 
(gb|BU501779.1|), blast E-value=0, identity=91.02% 
               

               
               190-167, UI-E-CL1-afd-h-11-0-UI.s1 UI-E-CL1 Homo sapiens cDNA clone 
(gb|BU729325.1|), blast E-value=4.99997e-41, identity=90.14% 
               

               
               192-167, UI-CF-FN0-afs-g-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB853161.1|), blast E-value=0, identity=90.73% 
               

               
               211-436, BovGen_13348 normal cattle brain Bos taurus cDNA clone 
(gb|CO885023.1|), blast E-value=0, identity=93.81%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-581, gnl|bosTau2|chr18 (41101065-41100491)
               

               
               1-581, gnl|Hg17|chr19 (43581423-43582001)
               

               
               1-581, gnl|Mm7|chr7 (26098880-26098328)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr18 (41101065-41100491)
               

               
               1-581, gnl|Hg17|chr19 (43581423-43582001)
               

               
               1-581, gnl|Mm7|chr7 (26098880-26098328)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	40-200, + strand, RNAmicro p=0.999859
	211-297, + strand, RNAmicro p=0.999716
	366-462, - strand, RNAmicro p=0.980288

	190-167, UI-E-EJ1-ajo-l-07-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone (gb\|BQ185047.1\|), blast E-value=0, identity=91.02%
	190-167, UI-H-EU1-azy-e-06-0-UI.s1 NCI_CGAP_Ct1 Homo sapiens cDNA clone (gb\|BQ445911.1\|), blast E-value=7e-40, identity=90%
	190-167, AGENCOURT_8867898 NIH_MGC_42 Homo sapiens cDNA clone IMAGE (gb\|BU501779.1\|), blast E-value=0, identity=91.02%
	190-167, UI-E-CL1-afd-h-11-0-UI.s1 UI-E-CL1 Homo sapiens cDNA clone (gb\|BU729325.1\|), blast E-value=4.99997e-41, identity=90.14%
	192-167, UI-CF-FN0-afs-g-06-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|CB853161.1\|), blast E-value=0, identity=90.73%
	211-436, BovGen_13348 normal cattle brain Bos taurus cDNA clone (gb\|CO885023.1\|), blast E-value=0, identity=93.81%

	1-581, gnl\|bosTau2\|chr18 (41101065-41100491)
	1-581, gnl\|Hg17\|chr19 (43581423-43582001)
	1-581, gnl\|Mm7\|chr7 (26098880-26098328)