Non-Coding RNA Search

rebs08c_h21.y1

Sequence:


               
               AGTCATATAACTGGGTAAAATTCATAGGATTCTACCATAAAGTACTAACTCCGGACTCCA
GTCATTCTAGAGCAAGGGGATCAACTTTATCTTCAAGTTACTCAACTAAAATGTTGGTAT
GTAAATAACATAGCAAAAATATAGTTGGCCTGATATGTATTAAAAATTCACTTTCAAATT
ATGTTAACTCTCAGACCACTGATGAATCATTTAGTAAATAAACTACATGGCAGTTTTCCT
AAACTAAATGATGCCTTAGTGCCTGGGAAGTTAAGATACTTTGGCAAAGTGTATTTAGCA
AGATTCAGGCTGGGTATACTGTGGCTGGGAATTCAGAGCTGGAGCGTAATTGAACTAGCT
CCCTGTGGTTTATAAAAACCAGTTATTTCACCATGGACTATTACAGATGACAACGGCTTT
CATGATGTGGTATTGGTCGATTTTTTTTTTTCCAAGTAAGTTGGAAATGAGAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCATATAACTGGGTAAAATTCATAGGATTCTACCATAAAGTACTAACTCCGGACTCCA
GTCATTCTAGAGCAAGGGGATCAACTTTATCTTCAAGTTACTCAACTAAAATGTTGGTAT
GTAAATAACATAGCAAAAATATAGTTGGCCTGATATGTATTAAAAATTCACTTTCAAATT
ATGTTAACTCTCAGACCACTGATGAATCATTTAGTAAATAAACTACATGGCAGTTTTCCT
AAACTAAATGATGCCTTAGTGCCTGGGAAGTTAAGATACTTTGGCAAAGTGTATTTAGCA
AGATTCAGGCTGGGTATACTGTGGCTGGGAATTCAGAGCTGGAGCGTAATTGAACTAGCT
CCCTGTGGTTTATAAAAACCAGTTATTTCACCATGGACTATTACAGATGACAACGGCTTT
CATGATGTGGTATTGGTCGATTTTTTTTTTTCCAAGTAAGTTGGAAATGAGAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-281, + strand, RNAz p=0.962411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-281, + strand, RNAz p=0.962411

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               171-296, + strand, RNAmicro p=0.987774

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-296, + strand, RNAmicro p=0.987774

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-476, gnl|bosTau2|chr23 (34328817-34328338)
               

               
               8-476, gnl|Hg17|chr6 (11690296-11690796)
               

               
               8-476, gnl|Mm7|chr13 (41080484-41080952)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-476, gnl|bosTau2|chr23 (34328817-34328338)
               

               
               8-476, gnl|Hg17|chr6 (11690296-11690796)
               

               
               8-476, gnl|Mm7|chr13 (41080484-41080952)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	8-476, gnl\|bosTau2\|chr23 (34328817-34328338)
	8-476, gnl\|Hg17\|chr6 (11690296-11690796)
	8-476, gnl\|Mm7\|chr13 (41080484-41080952)