rebs08c_n17.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGAGCAGAGGCTGAGCAGCAAGAAACAGCTAGTGTGGAGCAGTCATCACAGAAGGGA TGTGGGCAGCCTGCAGGGCAAGTGGCTGTTCTTCCTGAGATTCAGACAACACAGAATCCA GTGAATGAACAGGAAAATTCAGAACCTAAAACAGCAGAAGAAGAAGAAAGTAATTTCAGC TCTCCACTGATGCTTGGGCTCCAGCAAGAACAGAAGCGGAAGGAAAGCATTGCTGAGAAA AAGCCCAAGAAAGGTCTTGTTTTTGAAATTTCAAGTGATGATGGCTTTCAGATCTGTGCG GAAAGTATTGAAGATGCCTGGAAATCATTGACAGATAAAGTCCAGGAAGCTCGGTCAAAT GCCCGCCTAAAGCAGCTTTCATTTGCAGGTGTGAATGGTTTGAGGATGCTGGGGATTCTC CATGATGCGGTTGTGTTCCTGATTGAGCAGCTGTCTGGTGCCAAGCACTGTAGGAATTAC AAATTCCGTTTCCACAAGCCAGAGGAGGCCAATGAACCCCCCCTGAACCCTCATGGCTCA GCCAGGGCTGAGGTCCACCTGAGGAAGTCAGCATTTGACATGTTTAACTTCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGAGCAGAGGCTGAGCAGCAAGAAACAGCTAGTGTGGAGCAGTCATCACAGAAGGGA TGTGGGCAGCCTGCAGGGCAAGTGGCTGTTCTTCCTGAGATTCAGACAACACAGAATCCA GTGAATGAACAGGAAAATTCAGAACCTAAAACAGCAGAAGAAGAAGAAAGTAATTTCAGC TCTCCACTGATGCTTGGGCTCCAGCAAGAACAGAAGCGGAAGGAAAGCATTGCTGAGAAA AAGCCCAAGAAAGGTCTTGTTTTTGAAATTTCAAGTGATGATGGCTTTCAGATCTGTGCG GAAAGTATTGAAGATGCCTGGAAATCATTGACAGATAAAGTCCAGGAAGCTCGGTCAAAT GCCCGCCTAAAGCAGCTTTCATTTGCAGGTGTGAATGGTTTGAGGATGCTGGGGATTCTC CATGATGCGGTTGTGTTCCTGATTGAGCAGCTGTCTGGTGCCAAGCACTGTAGGAATTAC AAATTCCGTTTCCACAAGCCAGAGGAGGCCAATGAACCCCCCCTGAACCCTCATGGCTCA GCCAGGGCTGAGGTCCACCTGAGGAAGTCAGCATTTGACATGTTTAACTTCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 140-298, + strand, RNAz p=0.973041 | |
| 452-568, - strand, RNAz p=0.507554 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 140-298, + strand, RNAz p=0.973041 | |
| 452-568, - strand, RNAz p=0.507554 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 140-321, gnl|bosTau2|chr15 (15032731-15032550) | |
| 140-321, gnl|Hg17|chr11 (117885870-117886051) | |
| 140-321, gnl|Mm7|chr9 (44749093-44748912) | |
| 386-568, gnl|bosTau2|chr15 (15026207-15026024) | |
| 386-568, gnl|canFam2|chr5 (18226097-18225915) | |
| 386-568, gnl|danRer3|chr16 (16255325-16255507) | |
| 386-568, gnl|dasNov1|scaffold_7494 (543-361) | |
| 386-568, gnl|echTel1|scaffold_320983 (81405-81587) | |
| 386-568, gnl|fr1|chrUn (124431828-124432006) | |
| 386-568, gnl|galGal2|chr24 (4228698-4228516) | |
| 386-568, gnl|hg17|chr11 (117895542-117895724) | |
| 386-568, gnl|Hg17|chr11 (117895539-117895723) | |
| 386-568, gnl|loxAfr1|scaffold_91506 (7717-7899) | |
| 386-568, gnl|mm7|chr9 (44745428-44745246) | |
| 386-568, gnl|Mm7|chr9 (44745428-44745245) | |
| 386-568, gnl|monDom2|scaffold_2 (120160291-120160109) | |
| 386-568, gnl|oryCun1|scaffold_207575 (60529-60711) | |
| 386-568, gnl|panTro1|chr9 (119905209-119905391) | |
| 386-568, gnl|rheMac2|chr14 (116909442-116909624) | |
| 386-568, gnl|rn3|chr8 (47775607-47775425) | |
| 386-568, gnl|tetNig1|chr10 (10632420-10632591) | |
| 386-568, gnl|xenTro1|scaffold_18 (423880-423699) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-321, gnl|bosTau2|chr15 (15032731-15032550) | |
| 140-321, gnl|Hg17|chr11 (117885870-117886051) | |
| 140-321, gnl|Mm7|chr9 (44749093-44748912) | |
| 386-568, gnl|bosTau2|chr15 (15026207-15026024) | |
| 386-568, gnl|canFam2|chr5 (18226097-18225915) | |
| 386-568, gnl|danRer3|chr16 (16255325-16255507) | |
| 386-568, gnl|dasNov1|scaffold_7494 (543-361) | |
| 386-568, gnl|echTel1|scaffold_320983 (81405-81587) | |
| 386-568, gnl|fr1|chrUn (124431828-124432006) | |
| 386-568, gnl|galGal2|chr24 (4228698-4228516) | |
| 386-568, gnl|hg17|chr11 (117895542-117895724) | |
| 386-568, gnl|Hg17|chr11 (117895539-117895723) | |
| 386-568, gnl|loxAfr1|scaffold_91506 (7717-7899) | |
| 386-568, gnl|mm7|chr9 (44745428-44745246) | |
| 386-568, gnl|Mm7|chr9 (44745428-44745245) | |
| 386-568, gnl|monDom2|scaffold_2 (120160291-120160109) | |
| 386-568, gnl|oryCun1|scaffold_207575 (60529-60711) | |
| 386-568, gnl|panTro1|chr9 (119905209-119905391) | |
| 386-568, gnl|rheMac2|chr14 (116909442-116909624) | |
| 386-568, gnl|rn3|chr8 (47775607-47775425) | |
| 386-568, gnl|tetNig1|chr10 (10632420-10632591) | |
| 386-568, gnl|xenTro1|scaffold_18 (423880-423699) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |