Non-Coding RNA Search

rebs11c_g13.y1

Sequence:


               
               ACAGATTCAGACAGCTCTCTCCGAAACTTCAAGCCTGCTGTAACCAAAGCCAGCAGCTTC
AGTGGAATTTCAGTTCTGACAAGAGGTGATAGTTCTGGAAGCAGCAAAAGCATAGGCAGG
CTTTCGAAAACAGGTTCTGAGTCTTCTGGTAGTGTAGGGTCATCTACGGGCTCTCTCTCT
CACATCCAGCAGCCTCTTCCAGGTACAGCTTTCAGCCAGTCTTCTCATGGCGCACCTGTC
GTCTACCCAACTGTCAGCACTCATAGTTCTCTTTCCTTTGATGGTGGCCTAAATGGGCAA
GTCGCATCTCCTAGCACTAGCTTCTTTTTGCTTCCCTTGGAAGCGGCAGGCATACCACCT
GGCAGTATTCTGATCAACCCACAAACAGGTCAGCCGTTCATAAACCCAGATGGGAGTCCA
GTTGTGTATAATCCTCCTATGACTCAACAACCAGTTAGAACCCAAGTGCCTGGACCTCCA
CAGCCACCTCTGCCACCCCCACCACCTCAACAACAAGCAGCTAATCACATTTTCTCACAG
GATACCCTTGGGTCTCAGTTTAGCCATATGAGTCTTGCCCGCCAGCCATCTGCAGATGGT
TCTGACCCTCATGCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATTCAGACAGCTCTCTCCGAAACTTCAAGCCTGCTGTAACCAAAGCCAGCAGCTTC
AGTGGAATTTCAGTTCTGACAAGAGGTGATAGTTCTGGAAGCAGCAAAAGCATAGGCAGG
CTTTCGAAAACAGGTTCTGAGTCTTCTGGTAGTGTAGGGTCATCTACGGGCTCTCTCTCT
CACATCCAGCAGCCTCTTCCAGGTACAGCTTTCAGCCAGTCTTCTCATGGCGCACCTGTC
GTCTACCCAACTGTCAGCACTCATAGTTCTCTTTCCTTTGATGGTGGCCTAAATGGGCAA
GTCGCATCTCCTAGCACTAGCTTCTTTTTGCTTCCCTTGGAAGCGGCAGGCATACCACCT
GGCAGTATTCTGATCAACCCACAAACAGGTCAGCCGTTCATAAACCCAGATGGGAGTCCA
GTTGTGTATAATCCTCCTATGACTCAACAACCAGTTAGAACCCAAGTGCCTGGACCTCCA
CAGCCACCTCTGCCACCCCCACCACCTCAACAACAAGCAGCTAATCACATTTTCTCACAG
GATACCCTTGGGTCTCAGTTTAGCCATATGAGTCTTGCCCGCCAGCCATCTGCAGATGGT
TCTGACCCTCATGCCACCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               17-135, - strand, RNAz p=0.529286
               

               
               46-135, - strand, RNAz p=0.771795

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               17-135, - strand, RNAz p=0.529286
               

               
               46-135, - strand, RNAz p=0.771795

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-135, gnl|bosTau2|chr2 (38056983-38056849)
               

               
               1-135, gnl|canFam2|chr19 (41431307-41431533)
               

               
               1-135, gnl|danRer3|chrUn (78525107-78525309)
               

               
               1-135, gnl|dasNov1|scaffold_5612 (99574-99348)
               

               
               1-135, gnl|echTel1|scaffold_314319 (171455-171253)
               

               
               1-135, gnl|fr1|chrUn (112889291-112889528)
               

               
               1-135, gnl|galGal2|chr7 (31283535-31283766)
               

               
               1-135, gnl|hg17|chr2 (136230233-136230459)
               

               
               1-135, gnl|Hg17|chr2 (136230292-136230426)
               

               
               1-135, gnl|loxAfr1|scaffold_4723 (938-728)
               

               
               1-135, gnl|mm7|chr1 (128061991-128062217)
               

               
               1-135, gnl|Mm7|chr1 (128062050-128062184)
               

               
               1-135, gnl|monDom2|scaffold_2 (21245081-21245306)
               

               
               1-135, gnl|oryCun1|scaffold_110414 (14794-14568)
               

               
               1-135, gnl|panTro1|chr13 (25217528-25217754)
               

               
               1-135, gnl|rheMac2|chr13 (116540337-116540116)
               

               
               1-135, gnl|rn3|chr13 (40901481-40901707)
               

               
               1-135, gnl|tetNig1|chr3 (4046029-4045819)
               

               
               1-135, gnl|xenTro1|scaffold_31 (3174724-3174529)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr2 (38056983-38056849)
               

               
               1-135, gnl|canFam2|chr19 (41431307-41431533)
               

               
               1-135, gnl|danRer3|chrUn (78525107-78525309)
               

               
               1-135, gnl|dasNov1|scaffold_5612 (99574-99348)
               

               
               1-135, gnl|echTel1|scaffold_314319 (171455-171253)
               

               
               1-135, gnl|fr1|chrUn (112889291-112889528)
               

               
               1-135, gnl|galGal2|chr7 (31283535-31283766)
               

               
               1-135, gnl|hg17|chr2 (136230233-136230459)
               

               
               1-135, gnl|Hg17|chr2 (136230292-136230426)
               

               
               1-135, gnl|loxAfr1|scaffold_4723 (938-728)
               

               
               1-135, gnl|mm7|chr1 (128061991-128062217)
               

               
               1-135, gnl|Mm7|chr1 (128062050-128062184)
               

               
               1-135, gnl|monDom2|scaffold_2 (21245081-21245306)
               

               
               1-135, gnl|oryCun1|scaffold_110414 (14794-14568)
               

               
               1-135, gnl|panTro1|chr13 (25217528-25217754)
               

               
               1-135, gnl|rheMac2|chr13 (116540337-116540116)
               

               
               1-135, gnl|rn3|chr13 (40901481-40901707)
               

               
               1-135, gnl|tetNig1|chr3 (4046029-4045819)
               

               
               1-135, gnl|xenTro1|scaffold_31 (3174724-3174529)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	17-135, - strand, RNAz p=0.529286
	46-135, - strand, RNAz p=0.771795

	1-135, gnl\|bosTau2\|chr2 (38056983-38056849)
	1-135, gnl\|canFam2\|chr19 (41431307-41431533)
	1-135, gnl\|danRer3\|chrUn (78525107-78525309)
	1-135, gnl\|dasNov1\|scaffold_5612 (99574-99348)
	1-135, gnl\|echTel1\|scaffold_314319 (171455-171253)
	1-135, gnl\|fr1\|chrUn (112889291-112889528)
	1-135, gnl\|galGal2\|chr7 (31283535-31283766)
	1-135, gnl\|hg17\|chr2 (136230233-136230459)
	1-135, gnl\|Hg17\|chr2 (136230292-136230426)
	1-135, gnl\|loxAfr1\|scaffold_4723 (938-728)
	1-135, gnl\|mm7\|chr1 (128061991-128062217)
	1-135, gnl\|Mm7\|chr1 (128062050-128062184)
	1-135, gnl\|monDom2\|scaffold_2 (21245081-21245306)
	1-135, gnl\|oryCun1\|scaffold_110414 (14794-14568)
	1-135, gnl\|panTro1\|chr13 (25217528-25217754)
	1-135, gnl\|rheMac2\|chr13 (116540337-116540116)
	1-135, gnl\|rn3\|chr13 (40901481-40901707)
	1-135, gnl\|tetNig1\|chr3 (4046029-4045819)
	1-135, gnl\|xenTro1\|scaffold_31 (3174724-3174529)