Non-Coding RNA Search

rebs11c_k1.y1

Sequence:


               
               AAAGGACTGGGGAGAGGAAGCCCAGGAGACGTCGCAAGGAGCCCCAACCCTAGGCCCAAT
TCATTCCTAGCAGGAGTGAAGCCCTCTGTCTCCCCGTGACATGAGGAGACCCAGGCCCAG
CAGTGCCGGCCCGCCCCTCTGCAGAAGATGGCCCAGCGACACTCGGCAGCCCAGGGAGGC
ACCTTCCCCCACTGCAGAAGACACCAGCAGGGACTGAGTGGGAGTCCTGGCAGCACCCAG
AGAACAAGCAGACCAGAACAGTATGGCAAAGGCTCAGAAAACCCAACTGTCACTGGAACA
AAAACCCATAAAAGAAGTAAGAACCTACACACTGCACCTTAACGGGACTCCTACCTACTC
AAAGATGTAAATAGGACTGAGCTGTTCCTACCACAGTTACCCAAATGTCCAGGATACAAT
AGAAAATCACTCATATCACCAAAGCCAGGAGAACCCCAATCTAAATCAGAAAAACACAAT
CAACTGGTACCAATATACCATGATTCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGGACTGGGGAGAGGAAGCCCAGGAGACGTCGCAAGGAGCCCCAACCCTAGGCCCAAT
TCATTCCTAGCAGGAGTGAAGCCCTCTGTCTCCCCGTGACATGAGGAGACCCAGGCCCAG
CAGTGCCGGCCCGCCCCTCTGCAGAAGATGGCCCAGCGACACTCGGCAGCCCAGGGAGGC
ACCTTCCCCCACTGCAGAAGACACCAGCAGGGACTGAGTGGGAGTCCTGGCAGCACCCAG
AGAACAAGCAGACCAGAACAGTATGGCAAAGGCTCAGAAAACCCAACTGTCACTGGAACA
AAAACCCATAAAAGAAGTAAGAACCTACACACTGCACCTTAACGGGACTCCTACCTACTC
AAAGATGTAAATAGGACTGAGCTGTTCCTACCACAGTTACCCAAATGTCCAGGATACAAT
AGAAAATCACTCATATCACCAAAGCCAGGAGAACCCCAATCTAAATCAGAAAAACACAAT
CAACTGGTACCAATATACCATGATTCATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-181, - strand, RNAz p=0.648171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-181, - strand, RNAz p=0.648171

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               66-161, - strand, RNAmicro p=0.9845

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               66-161, - strand, RNAmicro p=0.9845

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               53-426, gnl|bosTau2|chr19 (38434094-38434482)
               

               
               53-426, gnl|dasNov1|scaffold_3333 (26548-26951)
               

               
               53-426, gnl|Hg17|chr19 (37025605-37026005)
               

               
               53-426, gnl|hg17|chr8 (57692911-57693298)
               

               
               53-426, gnl|Mm7|chr11 (102105248-102104917)
               

               
               53-426, gnl|mm7|chr4 (4259833-4260215)
               

               
               53-426, gnl|oryCun1|scaffold_195285 (3820-4195)
               

               
               53-426, gnl|panTro1|chr7 (59393244-59393632)
               

               
               53-426, gnl|rheMac2|chr8 (59217870-59218259)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-426, gnl|bosTau2|chr19 (38434094-38434482)
               

               
               53-426, gnl|dasNov1|scaffold_3333 (26548-26951)
               

               
               53-426, gnl|Hg17|chr19 (37025605-37026005)
               

               
               53-426, gnl|hg17|chr8 (57692911-57693298)
               

               
               53-426, gnl|Mm7|chr11 (102105248-102104917)
               

               
               53-426, gnl|mm7|chr4 (4259833-4260215)
               

               
               53-426, gnl|oryCun1|scaffold_195285 (3820-4195)
               

               
               53-426, gnl|panTro1|chr7 (59393244-59393632)
               

               
               53-426, gnl|rheMac2|chr8 (59217870-59218259)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	53-426, gnl\|bosTau2\|chr19 (38434094-38434482)
	53-426, gnl\|dasNov1\|scaffold_3333 (26548-26951)
	53-426, gnl\|Hg17\|chr19 (37025605-37026005)
	53-426, gnl\|hg17\|chr8 (57692911-57693298)
	53-426, gnl\|Mm7\|chr11 (102105248-102104917)
	53-426, gnl\|mm7\|chr4 (4259833-4260215)
	53-426, gnl\|oryCun1\|scaffold_195285 (3820-4195)
	53-426, gnl\|panTro1\|chr7 (59393244-59393632)
	53-426, gnl\|rheMac2\|chr8 (59217870-59218259)