Non-Coding RNA Search

rebs11c_l1.y1

Sequence:


               
               CGATATCGCCCTCAGCAACTGTGCGCTGACACATCACGGTGGCTGGTGGTACAAGAACTG
CCACTTGGCCAACCCCAATGGCAGATATGGGGAGACCAAGCATAGTGAGGGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATATCGCCCTCAGCAACTGTGCGCTGACACATCACGGTGGCTGGTGGTACAAGAACTG
CCACTTGGCCAACCCCAATGGCAGATATGGGGAGACCAAGCATAGTGAGGGGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-110, + strand, RNAz p=0.805741

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, + strand, RNAz p=0.805741

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-110, gnl|bosTau2|chr16 (44783322-44783431)
               

               
               1-110, gnl|canFam2|chr7 (27217988-27217756)
               

               
               1-110, gnl|danRer3|chr2 (28432924-28432730)
               

               
               1-110, gnl|dasNov1|scaffold_577 (47420-47202)
               

               
               1-110, gnl|echTel1|scaffold_283307 (40722-40504)
               

               
               1-110, gnl|fr1|chrUn (115895064-115895276)
               

               
               1-110, gnl|galGal2|chr8 (7079921-7079709)
               

               
               1-110, gnl|hg17|chr1 (171845163-171845384)
               

               
               1-110, gnl|Hg17|chr1 (171845235-171845344)
               

               
               1-110, gnl|loxAfr1|scaffold_11198 (70580-70360)
               

               
               1-110, gnl|mm7|chr1 (160050658-160050437)
               

               
               1-110, gnl|Mm7|chr1 (160050584-160050475)
               

               
               1-110, gnl|monDom2|scaffold_16 (26346137-26346373)
               

               
               1-110, gnl|oryCun1|scaffold_185117 (8501-8721)
               

               
               1-110, gnl|panTro1|chr1 (154245046-154245267)
               

               
               1-110, gnl|rheMac2|chr1 (204755903-204756124)
               

               
               1-110, gnl|rn3|chr13 (75520624-75520403)
               

               
               1-110, gnl|tetNig1|chr15 (5897818-5897639)
               

               
               1-110, gnl|xenTro1|scaffold_197 (1681962-1682152)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-110, gnl|bosTau2|chr16 (44783322-44783431)
               

               
               1-110, gnl|canFam2|chr7 (27217988-27217756)
               

               
               1-110, gnl|danRer3|chr2 (28432924-28432730)
               

               
               1-110, gnl|dasNov1|scaffold_577 (47420-47202)
               

               
               1-110, gnl|echTel1|scaffold_283307 (40722-40504)
               

               
               1-110, gnl|fr1|chrUn (115895064-115895276)
               

               
               1-110, gnl|galGal2|chr8 (7079921-7079709)
               

               
               1-110, gnl|hg17|chr1 (171845163-171845384)
               

               
               1-110, gnl|Hg17|chr1 (171845235-171845344)
               

               
               1-110, gnl|loxAfr1|scaffold_11198 (70580-70360)
               

               
               1-110, gnl|mm7|chr1 (160050658-160050437)
               

               
               1-110, gnl|Mm7|chr1 (160050584-160050475)
               

               
               1-110, gnl|monDom2|scaffold_16 (26346137-26346373)
               

               
               1-110, gnl|oryCun1|scaffold_185117 (8501-8721)
               

               
               1-110, gnl|panTro1|chr1 (154245046-154245267)
               

               
               1-110, gnl|rheMac2|chr1 (204755903-204756124)
               

               
               1-110, gnl|rn3|chr13 (75520624-75520403)
               

               
               1-110, gnl|tetNig1|chr15 (5897818-5897639)
               

               
               1-110, gnl|xenTro1|scaffold_197 (1681962-1682152)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-110, gnl\|bosTau2\|chr16 (44783322-44783431)
	1-110, gnl\|canFam2\|chr7 (27217988-27217756)
	1-110, gnl\|danRer3\|chr2 (28432924-28432730)
	1-110, gnl\|dasNov1\|scaffold_577 (47420-47202)
	1-110, gnl\|echTel1\|scaffold_283307 (40722-40504)
	1-110, gnl\|fr1\|chrUn (115895064-115895276)
	1-110, gnl\|galGal2\|chr8 (7079921-7079709)
	1-110, gnl\|hg17\|chr1 (171845163-171845384)
	1-110, gnl\|Hg17\|chr1 (171845235-171845344)
	1-110, gnl\|loxAfr1\|scaffold_11198 (70580-70360)
	1-110, gnl\|mm7\|chr1 (160050658-160050437)
	1-110, gnl\|Mm7\|chr1 (160050584-160050475)
	1-110, gnl\|monDom2\|scaffold_16 (26346137-26346373)
	1-110, gnl\|oryCun1\|scaffold_185117 (8501-8721)
	1-110, gnl\|panTro1\|chr1 (154245046-154245267)
	1-110, gnl\|rheMac2\|chr1 (204755903-204756124)
	1-110, gnl\|rn3\|chr13 (75520624-75520403)
	1-110, gnl\|tetNig1\|chr15 (5897818-5897639)
	1-110, gnl\|xenTro1\|scaffold_197 (1681962-1682152)