Non-Coding RNA Search

rebs11c_o15.y1

Sequence:


               
               GAGACATGACGTCACAGGAGATGTAGCCCTCAGCGCACGACTACTAATGATCTGACCCAC
GCACAAGAAGAGGAGATCATGTCCCTCCAAATGAAGCACACTGATTTGGATCATGAATGT
GAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGCCTGCCCCCCAGATTACACACTA
GCTATGAGGAGGTCACGCTGATGATGTTCCCTTAATGACACCCAACACCATTACAATGAT
TCCCAACACTATACCAGGGATTCAACCCTTACACACATTCAATACATTTACTGGAGGACA
GAACAATACTCTGCCCCATCCCCACCCCCACCCCCATTCACATTCAACAACCAGGGTATA
GCCAGATAAGAGAAACAAACTCTATTTTTTTGATGGATTGCAGTAAAAGATTACTGAAGA
TTCCTTGGCTTTCAACCTACAAGACTCTTACTATTTAAATAAGGAGGAATATTATGTGAA
TATACATATCAAGTACTTTGGGGGTTTTGGAAAAAAAATGAATTGTACATATATACACAA
ATCAACTTTAAAAATGAATTTCAATTGCTTGAAGCAATTGTTCTGAATGATACTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACATGACGTCACAGGAGATGTAGCCCTCAGCGCACGACTACTAATGATCTGACCCAC
GCACAAGAAGAGGAGATCATGTCCCTCCAAATGAAGCACACTGATTTGGATCATGAATGT
GAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGCCTGCCCCCCAGATTACACACTA
GCTATGAGGAGGTCACGCTGATGATGTTCCCTTAATGACACCCAACACCATTACAATGAT
TCCCAACACTATACCAGGGATTCAACCCTTACACACATTCAATACATTTACTGGAGGACA
GAACAATACTCTGCCCCATCCCCACCCCCACCCCCATTCACATTCAACAACCAGGGTATA
GCCAGATAAGAGAAACAAACTCTATTTTTTTGATGGATTGCAGTAAAAGATTACTGAAGA
TTCCTTGGCTTTCAACCTACAAGACTCTTACTATTTAAATAAGGAGGAATATTATGTGAA
TATACATATCAAGTACTTTGGGGGTTTTGGAAAAAAAATGAATTGTACATATATACACAA
ATCAACTTTAAAAATGAATTTCAATTGCTTGAAGCAATTGTTCTGAATGATACTTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               199-317, - strand, RNAz p=0.770767
               

               
               474-586, + strand, RNAz p=0.656499

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-317, - strand, RNAz p=0.770767
               

               
               474-586, + strand, RNAz p=0.656499

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014932, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014932, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-598, gnl|bosTau2|chr2 (48938137-48938733)
               

               
               1-598, gnl|Hg17|chr3 (175481435-175482023)
               

               
               1-598, gnl|Mm7|chr3 (25248325-25247718)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr2 (48938137-48938733)
               

               
               1-598, gnl|Hg17|chr3 (175481435-175482023)
               

               
               1-598, gnl|Mm7|chr3 (25248325-25247718)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	199-317, - strand, RNAz p=0.770767
	474-586, + strand, RNAz p=0.656499

	1-598, gnl\|bosTau2\|chr2 (48938137-48938733)
	1-598, gnl\|Hg17\|chr3 (175481435-175482023)
	1-598, gnl\|Mm7\|chr3 (25248325-25247718)