Non-Coding RNA Search

rebs11c_p11.y1

Sequence:


               
               GACAGACGAGAGGAGAGAGGGACCAGGCGAGAGACCCAGAGAAAGAGAAGAGGAAGCCGA
GCTCTGTGAGGGCTCAACCTCCAACTTGTTTCAGTTCATTCATCCTTCTCTTCGCTTCGG
GGAAGTGACTGTGGAGCTTGGTCTCTCCAAGTTGGTACCCAGGAAGATGATAATCACACA
AACGAGTCCATTCTGCATAATTAGCCTTGGGCTTCTCTTCCTGATTAATATTCTCCCTGG
AACAACTGGCCAAGGGGAATCAAGACGACAAGAACCTGGAGATTTTGTGAAGCAGGATAT
TGGCGGACTCTCTCCAAAGCATGCTCCAGATATTCCTGATGACAGCACTGACAACATCAC
TATCTTCACCAGAATCTTGGATCGTCTTCTGGATGGCTATGACAACCGACTTCGACCTGG
GCTTGGAGATGCAGTGACCGAAGTGAAGACTGACATCTACGTGACCAGTTTTGGCCCTGT
GTCAGACACTGACATGGAGTACACAATTGATGTATTTTTTCGACAGACATGGCATGATGA
AAGACTGAAATTTGATGGACCCATGAAGATCCTTCCACTGAATAATCTCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGACGAGAGGAGAGAGGGACCAGGCGAGAGACCCAGAGAAAGAGAAGAGGAAGCCGA
GCTCTGTGAGGGCTCAACCTCCAACTTGTTTCAGTTCATTCATCCTTCTCTTCGCTTCGG
GGAAGTGACTGTGGAGCTTGGTCTCTCCAAGTTGGTACCCAGGAAGATGATAATCACACA
AACGAGTCCATTCTGCATAATTAGCCTTGGGCTTCTCTTCCTGATTAATATTCTCCCTGG
AACAACTGGCCAAGGGGAATCAAGACGACAAGAACCTGGAGATTTTGTGAAGCAGGATAT
TGGCGGACTCTCTCCAAAGCATGCTCCAGATATTCCTGATGACAGCACTGACAACATCAC
TATCTTCACCAGAATCTTGGATCGTCTTCTGGATGGCTATGACAACCGACTTCGACCTGG
GCTTGGAGATGCAGTGACCGAAGTGAAGACTGACATCTACGTGACCAGTTTTGGCCCTGT
GTCAGACACTGACATGGAGTACACAATTGATGTATTTTTTCGACAGACATGGCATGATGA
AAGACTGAAATTTGATGGACCCATGAAGATCCTTCCACTGAATAATCTCCTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-98, + strand, RNAz p=0.773087

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-98, + strand, RNAz p=0.773087

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC028629, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC028629, +

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-142, gnl|bosTau2|chrX (10396205-10396349)
               

               
               1-142, gnl|canFam2|chrX (123503534-123503732)
               

               
               1-142, gnl|dasNov1|scaffold_66949 (8589-8800)
               

               
               1-142, gnl|echTel1|scaffold_246248 (3038-3220)
               

               
               1-142, gnl|hg17|chrX (151290179-151290392)
               

               
               1-142, gnl|Hg17|chrX (151290327-151290184)
               

               
               1-142, gnl|mm7|chrX (68042649-68042862)
               

               
               1-142, gnl|Mm7|chrX (68042779-68042654)
               

               
               1-142, gnl|monDom2|scaffold_84 (5179342-5179519)
               

               
               1-142, gnl|oryCun1|scaffold_139975 (7240-7455)
               

               
               1-142, gnl|panTro1|chrX (156570645-156570858)
               

               
               1-142, gnl|rheMac2|chrX (150538477-150538694)
               

               
               1-142, gnl|rn3|chrX (158706055-158706283)
               

               
               1-142, gnl|xenTro1|scaffold_329 (581821-581646)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chrX (10396205-10396349)
               

               
               1-142, gnl|canFam2|chrX (123503534-123503732)
               

               
               1-142, gnl|dasNov1|scaffold_66949 (8589-8800)
               

               
               1-142, gnl|echTel1|scaffold_246248 (3038-3220)
               

               
               1-142, gnl|hg17|chrX (151290179-151290392)
               

               
               1-142, gnl|Hg17|chrX (151290327-151290184)
               

               
               1-142, gnl|mm7|chrX (68042649-68042862)
               

               
               1-142, gnl|Mm7|chrX (68042779-68042654)
               

               
               1-142, gnl|monDom2|scaffold_84 (5179342-5179519)
               

               
               1-142, gnl|oryCun1|scaffold_139975 (7240-7455)
               

               
               1-142, gnl|panTro1|chrX (156570645-156570858)
               

               
               1-142, gnl|rheMac2|chrX (150538477-150538694)
               

               
               1-142, gnl|rn3|chrX (158706055-158706283)
               

               
               1-142, gnl|xenTro1|scaffold_329 (581821-581646)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-142, gnl\|bosTau2\|chrX (10396205-10396349)
	1-142, gnl\|canFam2\|chrX (123503534-123503732)
	1-142, gnl\|dasNov1\|scaffold_66949 (8589-8800)
	1-142, gnl\|echTel1\|scaffold_246248 (3038-3220)
	1-142, gnl\|hg17\|chrX (151290179-151290392)
	1-142, gnl\|Hg17\|chrX (151290327-151290184)
	1-142, gnl\|mm7\|chrX (68042649-68042862)
	1-142, gnl\|Mm7\|chrX (68042779-68042654)
	1-142, gnl\|monDom2\|scaffold_84 (5179342-5179519)
	1-142, gnl\|oryCun1\|scaffold_139975 (7240-7455)
	1-142, gnl\|panTro1\|chrX (156570645-156570858)
	1-142, gnl\|rheMac2\|chrX (150538477-150538694)
	1-142, gnl\|rn3\|chrX (158706055-158706283)
	1-142, gnl\|xenTro1\|scaffold_329 (581821-581646)