Non-Coding RNA Search

rebs12c_h2.y1

Sequence:


               
               GTGGATTCCGGGGAGAAGGGGCGGGACCTGCGCTTCCTCATGAACCTTCACAACAACGAG
GCAGTGCCGCACGACCGTGTTCTCCGAGATGCGCCAGGAGTGCAAGTGCCACGGCATGTC
CGGTTCGTGCACTGTGCGCACGTGCTGGATGCGGCTGCCCACGCTGCGCGCCGTCGGAGA
CGTGCTGCGCGACCGCTTCGACGGTGCCTCGCGCGTCCTCTACGGCAACCGCGGCAGCAA
CCGCGCCTCGCGAGCGGAACTGCTGCGCCTTGAGCCCGAGGACCCAGCGCACAAGCCTCC
CTCCCCCCACGACCTTGTCTACTTCGAGAAATCGCCCAACTTCTGCACATACAGCGGGCG
CCTGGGTACAGCGGGCACGGCGGGGCGCGCCTGCAACAGCTCGTCGCCCGCGCTGGACGG
CTGCGAGCTGCTCTGCTGTGGCCGGGGCCACCGCACGCGCACGCAGCGCGTCACCGAGCG
CTGCAACTGCACCTTCCACTGGTGCTGCCACGTCAGCTGCCGCAACTGCACGCACACGCG
CGTACTGCACGAGTGCCTGTGAGGCGCTGCGCGGACTCGCCTTAGGAGCATTCTCCTCAA
GCCCACCCCCAAACAGGTTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGATTCCGGGGAGAAGGGGCGGGACCTGCGCTTCCTCATGAACCTTCACAACAACGAG
GCAGTGCCGCACGACCGTGTTCTCCGAGATGCGCCAGGAGTGCAAGTGCCACGGCATGTC
CGGTTCGTGCACTGTGCGCACGTGCTGGATGCGGCTGCCCACGCTGCGCGCCGTCGGAGA
CGTGCTGCGCGACCGCTTCGACGGTGCCTCGCGCGTCCTCTACGGCAACCGCGGCAGCAA
CCGCGCCTCGCGAGCGGAACTGCTGCGCCTTGAGCCCGAGGACCCAGCGCACAAGCCTCC
CTCCCCCCACGACCTTGTCTACTTCGAGAAATCGCCCAACTTCTGCACATACAGCGGGCG
CCTGGGTACAGCGGGCACGGCGGGGCGCGCCTGCAACAGCTCGTCGCCCGCGCTGGACGG
CTGCGAGCTGCTCTGCTGTGGCCGGGGCCACCGCACGCGCACGCAGCGCGTCACCGAGCG
CTGCAACTGCACCTTCCACTGGTGCTGCCACGTCAGCTGCCGCAACTGCACGCACACGCG
CGTACTGCACGAGTGCCTGTGAGGCGCTGCGCGGACTCGCCTTAGGAGCATTCTCCTCAA
GCCCACCCCCAAACAGGTTCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               WNT1_EUMSK

Coded protein: 1 entry(ies)

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Protein identifier


               
               WNT1_EUMSK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               392-551, - strand, RNAz p=0.972106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-551, - strand, RNAz p=0.972106

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               73-611, gnl|bosTau2|chr5 (22471577-22471037)
               

               
               73-611, gnl|Hg17|chr12 (47661201-47661740)
               

               
               73-611, gnl|Mm7|chr15 (98777673-98778206)
               


               
               99-521, gnl|bosTau2|chr19 (41313574-41313161)
               

               
               99-521, gnl|Hg17|chr17 (42201309-42200896)
               

               
               99-521, gnl|Mm7|chr11 (103921347-103921760)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-611, gnl|bosTau2|chr5 (22471577-22471037)
               

               
               73-611, gnl|Hg17|chr12 (47661201-47661740)
               

               
               73-611, gnl|Mm7|chr15 (98777673-98778206)
               


               
               99-521, gnl|bosTau2|chr19 (41313574-41313161)
               

               
               99-521, gnl|Hg17|chr17 (42201309-42200896)
               

               
               99-521, gnl|Mm7|chr11 (103921347-103921760)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	73-611, gnl\|bosTau2\|chr5 (22471577-22471037)
	73-611, gnl\|Hg17\|chr12 (47661201-47661740)
	73-611, gnl\|Mm7\|chr15 (98777673-98778206)

	99-521, gnl\|bosTau2\|chr19 (41313574-41313161)
	99-521, gnl\|Hg17\|chr17 (42201309-42200896)
	99-521, gnl\|Mm7\|chr11 (103921347-103921760)