rebs13c_j22.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCTGTCAACCCTGGAGACAACTGCTACTCTGTGGGCAGCGTTGGGGATGTCCCCTTCA CGGCATATGGATCAGGCTGTGATATTGTTATTTTGGCAAATGACTTTGAATGTGTGCAGA TCATTCCTGGTGCTAAGCATGGAAACATCCAAGTCAGCTGTGTGGAGTGTTCTAACCAAC ATGGAAGAATTGCAGCTTCATATGGTAATGCTGTTTGTATTTTTGAGCCCTTGGGCATAA ATTCTCATAAGAGAAATTGTCAACTCAAGTGTCAGTGGCTTAAAACTGGGCAGTTTTTTT TGAGTTCCGTGACATACAACTTAGCATGGGACCCTCAAGATAACAGATTGTTGACAGCAA CTGATTCTATTCAGTTGTGGGCTCCTCCAGGAGGTGACATTCTGGAAGAGGAGGAAGAAA TTGATAATAAAATTCCTCCTGTTTTAAATGATTGGAAGTGCATCTGGCAGTGCAAAACCT CAGTATCTATACATTTGATGGAATGGTCCCCCGATGGTGAATACTTTGCTACTGCTGGAA AGCTgcacctacagcttatggaagtttctgggctaggggtcaaataggagctgcagctgc A |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCTGTCAACCCTGGAGACAACTGCTACTCTGTGGGCAGCGTTGGGGATGTCCCCTTCA CGGCATATGGATCAGGCTGTGATATTGTTATTTTGGCAAATGACTTTGAATGTGTGCAGA TCATTCCTGGTGCTAAGCATGGAAACATCCAAGTCAGCTGTGTGGAGTGTTCTAACCAAC ATGGAAGAATTGCAGCTTCATATGGTAATGCTGTTTGTATTTTTGAGCCCTTGGGCATAA ATTCTCATAAGAGAAATTGTCAACTCAAGTGTCAGTGGCTTAAAACTGGGCAGTTTTTTT TGAGTTCCGTGACATACAACTTAGCATGGGACCCTCAAGATAACAGATTGTTGACAGCAA CTGATTCTATTCAGTTGTGGGCTCCTCCAGGAGGTGACATTCTGGAAGAGGAGGAAGAAA TTGATAATAAAATTCCTCCTGTTTTAAATGATTGGAAGTGCATCTGGCAGTGCAAAACCT CAGTATCTATACATTTGATGGAATGGTCCCCCGATGGTGAATACTTTGCTACTGCTGGAA AGCTgcacctacagcttatggaagtttctgggctaggggtcaaataggagctgcagctgc A |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 338-475, + strand, RNAz p=0.996336 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-475, + strand, RNAz p=0.996336 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 62-188, gnl|bosTau2|chr10 (41128174-41128300) | |
| 62-188, gnl|canFam2|chr30 (20265970-20266106) | |
| 62-188, gnl|danRer3|chr9 (22683344-22683209) | |
| 62-188, gnl|echTel1|scaffold_310895 (104684-104549) | |
| 62-188, gnl|fr1|chrUn (145405596-145405731) | |
| 62-188, gnl|galGal2|chr10 (9815849-9815982) | |
| 62-188, gnl|hg17|chr15 (49655539-49655684) | |
| 62-188, gnl|Hg17|chr15 (49655671-49655545) | |
| 62-188, gnl|loxAfr1|scaffold_1164 (91062-91198) | |
| 62-188, gnl|mm7|chr9 (54509691-54509827) | |
| 62-188, gnl|Mm7|chr9 (54509823-54509697) | |
| 62-188, gnl|monDom2|scaffold_12 (16683551-16683406) | |
| 62-188, gnl|oryCun1|scaffold_198466 (119320-119456) | |
| 62-188, gnl|panTro1|chr16 (49679202-49679350) | |
| 62-188, gnl|rheMac2|chr7 (29883600-29883738) | |
| 62-188, gnl|rn3|chr8 (58018763-58018899) | |
| 62-188, gnl|tetNig1|chr5 (9870310-9870442) | |
| 62-188, gnl|xenTro1|scaffold_27 (1655693-1655838) | |
| 338-475, gnl|bosTau2|chr10 (41134996-41135133) | |
| 338-475, gnl|canFam2|chr30 (20259144-20259303) | |
| 338-475, gnl|danRer3|chr9 (22688033-22687862) | |
| 338-475, gnl|dasNov1|scaffold_48256 (11655-11814) | |
| 338-475, gnl|fr1|chrUn (145404792-145404959) | |
| 338-475, gnl|galGal2|chr10 (9801685-9801868) | |
| 338-475, gnl|hg17|chr15 (49643606-49643765) | |
| 338-475, gnl|Hg17|chr15 (49643751-49643614) | |
| 338-475, gnl|loxAfr1|scaffold_25370 (3224-3383) | |
| 338-475, gnl|mm7|chr9 (54502236-54502395) | |
| 338-475, gnl|Mm7|chr9 (54502381-54502244) | |
| 338-475, gnl|monDom2|scaffold_12 (16689420-16689243) | |
| 338-475, gnl|oryCun1|scaffold_200963 (91117-91276) | |
| 338-475, gnl|panTro1|chr16 (49667270-49667429) | |
| 338-475, gnl|rheMac2|chr7 (29870901-29871060) | |
| 338-475, gnl|rn3|chr8 (58013646-58013804) | |
| 338-475, gnl|tetNig1|chr5 (9869510-9869651) | |
| 338-475, gnl|xenTro1|scaffold_585 (662913-663074) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-188, gnl|bosTau2|chr10 (41128174-41128300) | |
| 62-188, gnl|canFam2|chr30 (20265970-20266106) | |
| 62-188, gnl|danRer3|chr9 (22683344-22683209) | |
| 62-188, gnl|echTel1|scaffold_310895 (104684-104549) | |
| 62-188, gnl|fr1|chrUn (145405596-145405731) | |
| 62-188, gnl|galGal2|chr10 (9815849-9815982) | |
| 62-188, gnl|hg17|chr15 (49655539-49655684) | |
| 62-188, gnl|Hg17|chr15 (49655671-49655545) | |
| 62-188, gnl|loxAfr1|scaffold_1164 (91062-91198) | |
| 62-188, gnl|mm7|chr9 (54509691-54509827) | |
| 62-188, gnl|Mm7|chr9 (54509823-54509697) | |
| 62-188, gnl|monDom2|scaffold_12 (16683551-16683406) | |
| 62-188, gnl|oryCun1|scaffold_198466 (119320-119456) | |
| 62-188, gnl|panTro1|chr16 (49679202-49679350) | |
| 62-188, gnl|rheMac2|chr7 (29883600-29883738) | |
| 62-188, gnl|rn3|chr8 (58018763-58018899) | |
| 62-188, gnl|tetNig1|chr5 (9870310-9870442) | |
| 62-188, gnl|xenTro1|scaffold_27 (1655693-1655838) | |
| 338-475, gnl|bosTau2|chr10 (41134996-41135133) | |
| 338-475, gnl|canFam2|chr30 (20259144-20259303) | |
| 338-475, gnl|danRer3|chr9 (22688033-22687862) | |
| 338-475, gnl|dasNov1|scaffold_48256 (11655-11814) | |
| 338-475, gnl|fr1|chrUn (145404792-145404959) | |
| 338-475, gnl|galGal2|chr10 (9801685-9801868) | |
| 338-475, gnl|hg17|chr15 (49643606-49643765) | |
| 338-475, gnl|Hg17|chr15 (49643751-49643614) | |
| 338-475, gnl|loxAfr1|scaffold_25370 (3224-3383) | |
| 338-475, gnl|mm7|chr9 (54502236-54502395) | |
| 338-475, gnl|Mm7|chr9 (54502381-54502244) | |
| 338-475, gnl|monDom2|scaffold_12 (16689420-16689243) | |
| 338-475, gnl|oryCun1|scaffold_200963 (91117-91276) | |
| 338-475, gnl|panTro1|chr16 (49667270-49667429) | |
| 338-475, gnl|rheMac2|chr7 (29870901-29871060) | |
| 338-475, gnl|rn3|chr8 (58013646-58013804) | |
| 338-475, gnl|tetNig1|chr5 (9869510-9869651) | |
| 338-475, gnl|xenTro1|scaffold_585 (662913-663074) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |