Non-Coding RNA Search

rebs13c_l5.y1

Sequence:


               
               CACAGCCCCGCCGCGCCCCGCCCGGCGCACCTCTCCTCTCCTCTCCAGCTCCAGCCGTAG
CCGCTCTCCCGGCCCTGTGTCCTGGCACCATGAGCTTCGGTTCCGAGCACTACCTGTGCA
CCGCCTCCTCCTACCGCAAGGTGTTCGGAGACGGCTCGCGCCTGTCCTCACGCCTCTCCG
GGGCCGGCGGCGCGGGTAGCTTCCGCTCGCAGTCGCTGTCCCGCTGCAATGTGGCCTCCT
CGGCAGCCTGCTCCTCTGCCTCGTCGCTTGGCCTGGGCCTGGCCTACCGCCGCTCTCCGG
CGTCGGACGGGCTAGACCTGAGTCAGGCGGCGGCGCGCACCAACGAGTACAAAATCATCC
GCACCAACGAGAAGGAGCAGCTGCAGGGCCTCAATGACCGCTTCGCGGTGTTCATCGAGA
AGGTGCATCAGCTGGAAACGCAGAACCGCGCGCTCGAGGCCGAGCTGGCTGCGCTGCGAC
AGCGCCACGCCGAGCCGTCGCGCGTCGGCGAGCTCTTCCAGCGCGAGCTGCGCGAGCTGC
GCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGCCCCGCCGCGCCCCGCCCGGCGCACCTCTCCTCTCCTCTCCAGCTCCAGCCGTAG
CCGCTCTCCCGGCCCTGTGTCCTGGCACCATGAGCTTCGGTTCCGAGCACTACCTGTGCA
CCGCCTCCTCCTACCGCAAGGTGTTCGGAGACGGCTCGCGCCTGTCCTCACGCCTCTCCG
GGGCCGGCGGCGCGGGTAGCTTCCGCTCGCAGTCGCTGTCCCGCTGCAATGTGGCCTCCT
CGGCAGCCTGCTCCTCTGCCTCGTCGCTTGGCCTGGGCCTGGCCTACCGCCGCTCTCCGG
CGTCGGACGGGCTAGACCTGAGTCAGGCGGCGGCGCGCACCAACGAGTACAAAATCATCC
GCACCAACGAGAAGGAGCAGCTGCAGGGCCTCAATGACCGCTTCGCGGTGTTCATCGAGA
AGGTGCATCAGCTGGAAACGCAGAACCGCGCGCTCGAGGCCGAGCTGGCTGCGCTGCGAC
AGCGCCACGCCGAGCCGTCGCGCGTCGGCGAGCTCTTCCAGCGCGAGCTGCGCGAGCTGC
GCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61855361|ref|XP_610746.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61855361|ref|XP_610746.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               43-196, - strand, RNAz p=0.888148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-196, - strand, RNAz p=0.888148

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-545, gnl|bosTau2|chr26 (17694186-17694731)
               

               
               5-545, gnl|Hg17|chr10 (105026875-105027414)
               

               
               5-545, gnl|Mm7|chr19 (46915168-46915707)
               


               
               338-542, gnl|bosTau2|chr13 (19897212-19897410)
               

               
               338-542, gnl|Hg17|chr10 (17311703-17311901)
               

               
               338-542, gnl|Mm7|chr2 (13513865-13514063)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-545, gnl|bosTau2|chr26 (17694186-17694731)
               

               
               5-545, gnl|Hg17|chr10 (105026875-105027414)
               

               
               5-545, gnl|Mm7|chr19 (46915168-46915707)
               


               
               338-542, gnl|bosTau2|chr13 (19897212-19897410)
               

               
               338-542, gnl|Hg17|chr10 (17311703-17311901)
               

               
               338-542, gnl|Mm7|chr2 (13513865-13514063)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	5-545, gnl\|bosTau2\|chr26 (17694186-17694731)
	5-545, gnl\|Hg17\|chr10 (105026875-105027414)
	5-545, gnl\|Mm7\|chr19 (46915168-46915707)

	338-542, gnl\|bosTau2\|chr13 (19897212-19897410)
	338-542, gnl\|Hg17\|chr10 (17311703-17311901)
	338-542, gnl\|Mm7\|chr2 (13513865-13514063)