Non-Coding RNA Search

rebs14c_n5.y1

Sequence:


               
               GAGAAAATACTTTTTTACCCAAAAGTTTCAAAGGGTATAAAATCTCAAATTCTGTCTCAC
CAAAAACAAAGACAAGCATATTTAGTACATTATTAGTTATTTTTACATGGGAACGTGTTT
TCCTCTATAAATGATTAAAAAGTCACTTTATAATCCTTTAAAAATATTTCTTTTATATAT
TTGTCATTAATTTGATTAAAATATTAATTTGAAATTCCAGAATAATTTCCCAGAGTGGGT
TATAGGCAACCTCTCTCATATTTTCACATAGCTCTTTTTTAAAAAAAATATATATATAGT
GAATTTCCTTTACTTGCTAGTGTTCCAAGTATTTGGTTAAGATTTTCACAATACTGTCAT
ATATTAATATCACCAAAGCTCTGAGAGTAATATTTGTAAGTTAACTGTTTTATGGGGATA
TTGAAAATATGGTATTTTGGTAGGGTCTATTAAAATGAGTGTCACTTATTAGAAGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAAATACTTTTTTACCCAAAAGTTTCAAAGGGTATAAAATCTCAAATTCTGTCTCAC
CAAAAACAAAGACAAGCATATTTAGTACATTATTAGTTATTTTTACATGGGAACGTGTTT
TCCTCTATAAATGATTAAAAAGTCACTTTATAATCCTTTAAAAATATTTCTTTTATATAT
TTGTCATTAATTTGATTAAAATATTAATTTGAAATTCCAGAATAATTTCCCAGAGTGGGT
TATAGGCAACCTCTCTCATATTTTCACATAGCTCTTTTTTAAAAAAAATATATATATAGT
GAATTTCCTTTACTTGCTAGTGTTCCAAGTATTTGGTTAAGATTTTCACAATACTGTCAT
ATATTAATATCACCAAAGCTCTGAGAGTAATATTTGTAAGTTAACTGTTTTATGGGGATA
TTGAAAATATGGTATTTTGGTAGGGTCTATTAAAATGAGTGTCACTTATTAGAAGTACA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-479, gnl|bosTau2|chr3 (50568711-50568236)
               

               
               1-479, gnl|canFam2|chr6 (78646217-78645434)
               

               
               1-479, gnl|dasNov1|scaffold_1137 (8110-7357)
               

               
               1-479, gnl|echTel1|scaffold_309994 (51226-50464)
               

               
               1-479, gnl|hg17|chr1 (70300488-70301238)
               

               
               1-479, gnl|Hg17|chr1 (70300732-70301197)
               

               
               1-479, gnl|mm7|chr3 (157991735-157991019)
               

               
               1-479, gnl|Mm7|chr3 (157991490-157991052)
               

               
               1-479, gnl|monDom2|scaffold_40 (4650225-4649410)
               

               
               1-479, gnl|oryCun1|scaffold_199381 (139775-139129)
               

               
               1-479, gnl|panTro1|chr1 (68862993-68863743)
               

               
               1-479, gnl|rheMac2|chr1 (72877871-72878617)
               

               
               1-479, gnl|rn3|chr2 (256242948-256242220)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr3 (50568711-50568236)
               

               
               1-479, gnl|canFam2|chr6 (78646217-78645434)
               

               
               1-479, gnl|dasNov1|scaffold_1137 (8110-7357)
               

               
               1-479, gnl|echTel1|scaffold_309994 (51226-50464)
               

               
               1-479, gnl|hg17|chr1 (70300488-70301238)
               

               
               1-479, gnl|Hg17|chr1 (70300732-70301197)
               

               
               1-479, gnl|mm7|chr3 (157991735-157991019)
               

               
               1-479, gnl|Mm7|chr3 (157991490-157991052)
               

               
               1-479, gnl|monDom2|scaffold_40 (4650225-4649410)
               

               
               1-479, gnl|oryCun1|scaffold_199381 (139775-139129)
               

               
               1-479, gnl|panTro1|chr1 (68862993-68863743)
               

               
               1-479, gnl|rheMac2|chr1 (72877871-72878617)
               

               
               1-479, gnl|rn3|chr2 (256242948-256242220)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-479, gnl\|bosTau2\|chr3 (50568711-50568236)
	1-479, gnl\|canFam2\|chr6 (78646217-78645434)
	1-479, gnl\|dasNov1\|scaffold_1137 (8110-7357)
	1-479, gnl\|echTel1\|scaffold_309994 (51226-50464)
	1-479, gnl\|hg17\|chr1 (70300488-70301238)
	1-479, gnl\|Hg17\|chr1 (70300732-70301197)
	1-479, gnl\|mm7\|chr3 (157991735-157991019)
	1-479, gnl\|Mm7\|chr3 (157991490-157991052)
	1-479, gnl\|monDom2\|scaffold_40 (4650225-4649410)
	1-479, gnl\|oryCun1\|scaffold_199381 (139775-139129)
	1-479, gnl\|panTro1\|chr1 (68862993-68863743)
	1-479, gnl\|rheMac2\|chr1 (72877871-72878617)
	1-479, gnl\|rn3\|chr2 (256242948-256242220)