Non-Coding RNA Search

rebs15c_a10.y1

Sequence:


               
               GATTCGTTTCTGCTGAGCTCCGATGGGAACTCCTCAATAGTTCATGTTTTGAAATGTCAG
CAGTTTTTGCAAACAGATGTGAGAAATCTTTTCACTTCCCGTAACAAGGGTTGGCCCCTT
GGTTTCAAGCGTGGTGTTCCATCGTAGGTTCCAGAGGGCCATCTGATGTATTTCAGGAGA
TTGAAGCGTCATGTTGGCTGACTCAGTGACATCTCTAAGGCTCTGGCGGGGGTTGGGGTC
TCAAACTAGCAGCCCCTTCTTTCAAAAATATGTTTGCTTTGCTGTTTCACATGCATTTGG
TATATACGACATGGCAGCTTCCAATTTCTAGTTGGATTTGTCTTACACTGTTTATATTAC
TTGCCACACAGGAACTGTTTGCTTTTTCATTGCGAAATTGGGTAGGGGCGCCAAGTTCAG
CTCTACATTAATCTGTCTTGACTTATTTTAGACGTTGAATTGATGTCAGCACAATTAAAT
ACATACGTTGTATATGTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCGTTTCTGCTGAGCTCCGATGGGAACTCCTCAATAGTTCATGTTTTGAAATGTCAG
CAGTTTTTGCAAACAGATGTGAGAAATCTTTTCACTTCCCGTAACAAGGGTTGGCCCCTT
GGTTTCAAGCGTGGTGTTCCATCGTAGGTTCCAGAGGGCCATCTGATGTATTTCAGGAGA
TTGAAGCGTCATGTTGGCTGACTCAGTGACATCTCTAAGGCTCTGGCGGGGGTTGGGGTC
TCAAACTAGCAGCCCCTTCTTTCAAAAATATGTTTGCTTTGCTGTTTCACATGCATTTGG
TATATACGACATGGCAGCTTCCAATTTCTAGTTGGATTTGTCTTACACTGTTTATATTAC
TTGCCACACAGGAACTGTTTGCTTTTTCATTGCGAAATTGGGTAGGGGCGCCAAGTTCAG
CTCTACATTAATCTGTCTTGACTTATTTTAGACGTTGAATTGATGTCAGCACAATTAAAT
ACATACGTTGTATATGTTGAC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               34-501, gnl|bosTau2|chr21 (42599879-42599394)
               

               
               34-501, gnl|canFam2|chr8 (68078585-68079330)
               

               
               34-501, gnl|hg17|chr14 (95817452-95818197)
               

               
               34-501, gnl|Hg17|chr14 (95817971-95817520)
               

               
               34-501, gnl|loxAfr1|scaffold_79645 (4355-5071)
               

               
               34-501, gnl|mm7|chr12 (103111313-103111911)
               

               
               34-501, gnl|monDom2|scaffold_6 (74852257-74853027)
               

               
               34-501, gnl|oryCun1|scaffold_204147 (33620-34240)
               

               
               34-501, gnl|panTro1|chr15 (96282516-96283263)
               

               
               34-501, gnl|rheMac2|chr7 (159517844-159518594)
               

               
               34-501, gnl|rn3|chr6 (129775284-129775905)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-501, gnl|bosTau2|chr21 (42599879-42599394)
               

               
               34-501, gnl|canFam2|chr8 (68078585-68079330)
               

               
               34-501, gnl|hg17|chr14 (95817452-95818197)
               

               
               34-501, gnl|Hg17|chr14 (95817971-95817520)
               

               
               34-501, gnl|loxAfr1|scaffold_79645 (4355-5071)
               

               
               34-501, gnl|mm7|chr12 (103111313-103111911)
               

               
               34-501, gnl|monDom2|scaffold_6 (74852257-74853027)
               

               
               34-501, gnl|oryCun1|scaffold_204147 (33620-34240)
               

               
               34-501, gnl|panTro1|chr15 (96282516-96283263)
               

               
               34-501, gnl|rheMac2|chr7 (159517844-159518594)
               

               
               34-501, gnl|rn3|chr6 (129775284-129775905)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	34-501, gnl\|bosTau2\|chr21 (42599879-42599394)
	34-501, gnl\|canFam2\|chr8 (68078585-68079330)
	34-501, gnl\|hg17\|chr14 (95817452-95818197)
	34-501, gnl\|Hg17\|chr14 (95817971-95817520)
	34-501, gnl\|loxAfr1\|scaffold_79645 (4355-5071)
	34-501, gnl\|mm7\|chr12 (103111313-103111911)
	34-501, gnl\|monDom2\|scaffold_6 (74852257-74853027)
	34-501, gnl\|oryCun1\|scaffold_204147 (33620-34240)
	34-501, gnl\|panTro1\|chr15 (96282516-96283263)
	34-501, gnl\|rheMac2\|chr7 (159517844-159518594)
	34-501, gnl\|rn3\|chr6 (129775284-129775905)