Non-Coding RNA Search

rebs16c_d6.y1

Sequence:


               
               TCCGAACCCGCGGGGCTTCGTCCCGCAAAAGGAGATCGTCTACAACAAGCTGCTGCCCTA
CGCCGAGCAGCTGGACGCCGAATCCGACTTGCAGCTGGCCCAGATCAAAAGCAACCTGGG
CCGGGCGGTGCAGCTCCAAGAGCTGTGGCCCGGGGGCCTCTTCTGGACTAGGAAACTCTC
CACATATATTCGACTTTATGGGAGAAAATTTAGCAAAGAAGATCATGTTCTTTTTATCAA
GTTACTGTATGAGCTGGTATCAATTCCAAAACTGGAAATCAGCATGATGCAGGGATTTGC
CCGTCTCTTGATCAACTTGTTAAAGAAAAAGGAACTTCTTTCAAGAGATGATTTGGAGTT
ACCTTGGAGACCACTTTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGAACCCGCGGGGCTTCGTCCCGCAAAAGGAGATCGTCTACAACAAGCTGCTGCCCTA
CGCCGAGCAGCTGGACGCCGAATCCGACTTGCAGCTGGCCCAGATCAAAAGCAACCTGGG
CCGGGCGGTGCAGCTCCAAGAGCTGTGGCCCGGGGGCCTCTTCTGGACTAGGAAACTCTC
CACATATATTCGACTTTATGGGAGAAAATTTAGCAAAGAAGATCATGTTCTTTTTATCAA
GTTACTGTATGAGCTGGTATCAATTCCAAAACTGGAAATCAGCATGATGCAGGGATTTGC
CCGTCTCTTGATCAACTTGTTAAAGAAAAAGGAACTTCTTTCAAGAGATGATTTGGAGTT
ACCTTGGAGACCACTTTATGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-186, - strand, RNAz p=0.832151
               

               
               40-159, - strand, RNAz p=0.987726

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-186, - strand, RNAz p=0.832151
               

               
               40-159, - strand, RNAz p=0.987726

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014614, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014614, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-186, gnl|bosTau2|chr11 (25765386-25765201)
               

               
               1-186, gnl|danRer3|chr13 (38336692-38336547)
               

               
               1-186, gnl|fr1|chrUn (186544931-186544788)
               

               
               1-186, gnl|hg17|chr2 (54109324-54109469)
               

               
               1-186, gnl|Hg17|chr2 (54109513-54109328)
               

               
               1-186, gnl|mm7|chr11 (30724239-30724094)
               

               
               1-186, gnl|Mm7|chr11 (30724048-30724233)
               

               
               1-186, gnl|monDom2|scaffold_1 (16546372-16546516)
               

               
               1-186, gnl|rheMac2|chr13 (54248939-54249084)
               

               
               1-186, gnl|rn3|chr14 (111919724-111919579)
               

               
               1-186, gnl|tetNig1|chr17 (3742675-3742818)
               

               
               1-186, gnl|xenTro1|scaffold_234 (1376947-1376804)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr11 (25765386-25765201)
               

               
               1-186, gnl|danRer3|chr13 (38336692-38336547)
               

               
               1-186, gnl|fr1|chrUn (186544931-186544788)
               

               
               1-186, gnl|hg17|chr2 (54109324-54109469)
               

               
               1-186, gnl|Hg17|chr2 (54109513-54109328)
               

               
               1-186, gnl|mm7|chr11 (30724239-30724094)
               

               
               1-186, gnl|Mm7|chr11 (30724048-30724233)
               

               
               1-186, gnl|monDom2|scaffold_1 (16546372-16546516)
               

               
               1-186, gnl|rheMac2|chr13 (54248939-54249084)
               

               
               1-186, gnl|rn3|chr14 (111919724-111919579)
               

               
               1-186, gnl|tetNig1|chr17 (3742675-3742818)
               

               
               1-186, gnl|xenTro1|scaffold_234 (1376947-1376804)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	39-186, - strand, RNAz p=0.832151
	40-159, - strand, RNAz p=0.987726

	1-186, gnl\|bosTau2\|chr11 (25765386-25765201)
	1-186, gnl\|danRer3\|chr13 (38336692-38336547)
	1-186, gnl\|fr1\|chrUn (186544931-186544788)
	1-186, gnl\|hg17\|chr2 (54109324-54109469)
	1-186, gnl\|Hg17\|chr2 (54109513-54109328)
	1-186, gnl\|mm7\|chr11 (30724239-30724094)
	1-186, gnl\|Mm7\|chr11 (30724048-30724233)
	1-186, gnl\|monDom2\|scaffold_1 (16546372-16546516)
	1-186, gnl\|rheMac2\|chr13 (54248939-54249084)
	1-186, gnl\|rn3\|chr14 (111919724-111919579)
	1-186, gnl\|tetNig1\|chr17 (3742675-3742818)
	1-186, gnl\|xenTro1\|scaffold_234 (1376947-1376804)