Non-Coding RNA Search

rebs17c_a23.y1

Sequence:


               
               GATTCACAACTAACAAAGCAGGTCACATTTGTAATACCTGAACTTGAAACAAATAAACAG
GAGGAATGACATACGATTACCCAGAAACACAGTGGCAGCTACCAATGATCTATTTTCTAT
CCATTTGATAGACCATCACGAGACATGACGAAATACAATGCTATTTTTCTGATGTGTGCT
AATAAAGTCAGAGTTAACAAATACAACTTGACACCTTCGTCCATTTTCATTCCAAAAAAA
AAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCACAACTAACAAAGCAGGTCACATTTGTAATACCTGAACTTGAAACAAATAAACAG
GAGGAATGACATACGATTACCCAGAAACACAGTGGCAGCTACCAATGATCTATTTTCTAT
CCATTTGATAGACCATCACGAGACATGACGAAATACAATGCTATTTTTCTGATGTGTGCT
AATAAAGTCAGAGTTAACAAATACAACTTGACACCTTCGTCCATTTTCATTCCAAAAAAA
AAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-237, gnl|bosTau2|chr27 (7464851-7465082)
               

               
               1-237, gnl|canFam2|chr16 (49385455-49384827)
               

               
               1-237, gnl|dasNov1|scaffold_5106 (86145-85475)
               

               
               1-237, gnl|echTel1|scaffold_322319 (38566-37892)
               

               
               1-237, gnl|hg17|chr4 (185317394-185318070)
               

               
               1-237, gnl|Hg17|chr4 (185317512-185317758)
               

               
               1-237, gnl|loxAfr1|scaffold_959 (139775-139113)
               

               
               1-237, gnl|mm7|chr8 (45960142-45959469)
               

               
               1-237, gnl|Mm7|chr8 (45960045-45959793)
               

               
               1-237, gnl|monDom2|scaffold_9 (66013491-66014198)
               

               
               1-237, gnl|oryCun1|scaffold_178093 (72197-72867)
               

               
               1-237, gnl|panTro1|chr3 (203527495-203528172)
               

               
               1-237, gnl|rheMac2|chr5 (176133771-176134439)
               

               
               1-237, gnl|rn3|chr16 (48307979-48308631)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-237, gnl|bosTau2|chr27 (7464851-7465082)
               

               
               1-237, gnl|canFam2|chr16 (49385455-49384827)
               

               
               1-237, gnl|dasNov1|scaffold_5106 (86145-85475)
               

               
               1-237, gnl|echTel1|scaffold_322319 (38566-37892)
               

               
               1-237, gnl|hg17|chr4 (185317394-185318070)
               

               
               1-237, gnl|Hg17|chr4 (185317512-185317758)
               

               
               1-237, gnl|loxAfr1|scaffold_959 (139775-139113)
               

               
               1-237, gnl|mm7|chr8 (45960142-45959469)
               

               
               1-237, gnl|Mm7|chr8 (45960045-45959793)
               

               
               1-237, gnl|monDom2|scaffold_9 (66013491-66014198)
               

               
               1-237, gnl|oryCun1|scaffold_178093 (72197-72867)
               

               
               1-237, gnl|panTro1|chr3 (203527495-203528172)
               

               
               1-237, gnl|rheMac2|chr5 (176133771-176134439)
               

               
               1-237, gnl|rn3|chr16 (48307979-48308631)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-237, gnl\|bosTau2\|chr27 (7464851-7465082)
	1-237, gnl\|canFam2\|chr16 (49385455-49384827)
	1-237, gnl\|dasNov1\|scaffold_5106 (86145-85475)
	1-237, gnl\|echTel1\|scaffold_322319 (38566-37892)
	1-237, gnl\|hg17\|chr4 (185317394-185318070)
	1-237, gnl\|Hg17\|chr4 (185317512-185317758)
	1-237, gnl\|loxAfr1\|scaffold_959 (139775-139113)
	1-237, gnl\|mm7\|chr8 (45960142-45959469)
	1-237, gnl\|Mm7\|chr8 (45960045-45959793)
	1-237, gnl\|monDom2\|scaffold_9 (66013491-66014198)
	1-237, gnl\|oryCun1\|scaffold_178093 (72197-72867)
	1-237, gnl\|panTro1\|chr3 (203527495-203528172)
	1-237, gnl\|rheMac2\|chr5 (176133771-176134439)
	1-237, gnl\|rn3\|chr16 (48307979-48308631)