rebs19c_e21.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGATTAAAGCTACTCCAAAAGCTAAGATTTATTTGAGGTTCCTAGATTATCAAGAGGG AGCACTCAAATGAATGCAAGAGAAACTTTGTTGCAGTCTACGATGGAAGCAGTTCTATTG AAAATCTCAAGGCCAAGTTCTGCAGCACAGTGGCCAATGATGTAATGCTTAAAACAGGAG TTGGGGTAATACGGATGTGGGCAGATGAAGGTAGTCGGCTTAGCAGGTTCAGAATGCTCT TTACTTCCTTGGTGGAGCCTCCCTGCACAGGCAGCACTTTCTTTTGCCATAGCAACATGT GCATCAATAATTCTTTAGTCTGTAATGGTGTTCAAAACTGTGCATACCCTTGGGATGAAA ATCATTGCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGATTAAAGCTACTCCAAAAGCTAAGATTTATTTGAGGTTCCTAGATTATCAAGAGGG AGCACTCAAATGAATGCAAGAGAAACTTTGTTGCAGTCTACGATGGAAGCAGTTCTATTG AAAATCTCAAGGCCAAGTTCTGCAGCACAGTGGCCAATGATGTAATGCTTAAAACAGGAG TTGGGGTAATACGGATGTGGGCAGATGAAGGTAGTCGGCTTAGCAGGTTCAGAATGCTCT TTACTTCCTTGGTGGAGCCTCCCTGCACAGGCAGCACTTTCTTTTGCCATAGCAACATGT GCATCAATAATTCTTTAGTCTGTAATGGTGTTCAAAACTGTGCATACCCTTGGGATGAAA ATCATTGCAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 27-146, - strand, RNAz p=0.957877 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 27-146, - strand, RNAz p=0.957877 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 27-258, gnl|bosTau2|chr18 (15864637-15864407) | |
| 27-258, gnl|canFam2|chr2 (70704354-70704582) | |
| 27-258, gnl|canFam2|chr2 (70704588-70704377) | |
| 27-258, gnl|danRer3|chr7 (35119569-35119364) | |
| 27-258, gnl|danRer3|chr7 (35119341-35119552) | |
| 27-258, gnl|dasNov1|scaffold_10531 (2297-2071) | |
| 27-258, gnl|dasNov1|scaffold_10531 (2065-2276) | |
| 27-258, gnl|echTel1|scaffold_25761 (963-747) | |
| 27-258, gnl|echTel1|scaffold_25761 (741-952) | |
| 27-258, gnl|fr1|chrUn (207496685-207496895) | |
| 27-258, gnl|fr1|chrUn (207496923-207496708) | |
| 27-258, gnl|galGal2|chr11 (7874329-7874540) | |
| 27-258, gnl|galGal2|chr11 (7874563-7874352) | |
| 27-258, gnl|hg17|chr16 (45700886-45701097) | |
| 27-258, gnl|Hg17|chr16 (45701125-45700895) | |
| 27-258, gnl|hg17|chr8 (125223854-125224077) | |
| 27-258, gnl|loxAfr1|scaffold_71754 (12336-12547) | |
| 27-258, gnl|loxAfr1|scaffold_99523 (3993-3813) | |
| 27-258, gnl|mm7|chr8 (84238652-84238424) | |
| 27-258, gnl|mm7|chr8 (84238420-84238629) | |
| 27-258, gnl|Mm7|chr8 (84238657-84238427) | |
| 27-258, gnl|monDom2|scaffold_35 (11216775-11216547) | |
| 27-258, gnl|monDom2|scaffold_35 (11216541-11216752) | |
| 27-258, gnl|oryCun1|scaffold_83944 (4180-4408) | |
| 27-258, gnl|oryCun1|scaffold_83944 (4413-4203) | |
| 27-258, gnl|panTro1|chr7 (127953291-127953514) | |
| 27-258, gnl|panTro1|chrUn_random (9461135-9461346) | |
| 27-258, gnl|rheMac2|chr20 (45321860-45322071) | |
| 27-258, gnl|rheMac2|chr8 (126720526-126720754) | |
| 27-258, gnl|rn3|chr19 (22765670-22765898) | |
| 27-258, gnl|rn3|chr19 (22765902-22765693) | |
| 27-258, gnl|tetNig1|chrUn_random (136222116-136222327) | |
| 27-258, gnl|tetNig1|chrUn_random (136222351-136222139) | |
| 27-258, gnl|xenTro1|scaffold_748 (400798-400575) | |
| 27-258, gnl|xenTro1|scaffold_748 (400563-400780) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-258, gnl|bosTau2|chr18 (15864637-15864407) | |
| 27-258, gnl|canFam2|chr2 (70704354-70704582) | |
| 27-258, gnl|canFam2|chr2 (70704588-70704377) | |
| 27-258, gnl|danRer3|chr7 (35119569-35119364) | |
| 27-258, gnl|danRer3|chr7 (35119341-35119552) | |
| 27-258, gnl|dasNov1|scaffold_10531 (2297-2071) | |
| 27-258, gnl|dasNov1|scaffold_10531 (2065-2276) | |
| 27-258, gnl|echTel1|scaffold_25761 (963-747) | |
| 27-258, gnl|echTel1|scaffold_25761 (741-952) | |
| 27-258, gnl|fr1|chrUn (207496685-207496895) | |
| 27-258, gnl|fr1|chrUn (207496923-207496708) | |
| 27-258, gnl|galGal2|chr11 (7874329-7874540) | |
| 27-258, gnl|galGal2|chr11 (7874563-7874352) | |
| 27-258, gnl|hg17|chr16 (45700886-45701097) | |
| 27-258, gnl|Hg17|chr16 (45701125-45700895) | |
| 27-258, gnl|hg17|chr8 (125223854-125224077) | |
| 27-258, gnl|loxAfr1|scaffold_71754 (12336-12547) | |
| 27-258, gnl|loxAfr1|scaffold_99523 (3993-3813) | |
| 27-258, gnl|mm7|chr8 (84238652-84238424) | |
| 27-258, gnl|mm7|chr8 (84238420-84238629) | |
| 27-258, gnl|Mm7|chr8 (84238657-84238427) | |
| 27-258, gnl|monDom2|scaffold_35 (11216775-11216547) | |
| 27-258, gnl|monDom2|scaffold_35 (11216541-11216752) | |
| 27-258, gnl|oryCun1|scaffold_83944 (4180-4408) | |
| 27-258, gnl|oryCun1|scaffold_83944 (4413-4203) | |
| 27-258, gnl|panTro1|chr7 (127953291-127953514) | |
| 27-258, gnl|panTro1|chrUn_random (9461135-9461346) | |
| 27-258, gnl|rheMac2|chr20 (45321860-45322071) | |
| 27-258, gnl|rheMac2|chr8 (126720526-126720754) | |
| 27-258, gnl|rn3|chr19 (22765670-22765898) | |
| 27-258, gnl|rn3|chr19 (22765902-22765693) | |
| 27-258, gnl|tetNig1|chrUn_random (136222116-136222327) | |
| 27-258, gnl|tetNig1|chrUn_random (136222351-136222139) | |
| 27-258, gnl|xenTro1|scaffold_748 (400798-400575) | |
| 27-258, gnl|xenTro1|scaffold_748 (400563-400780) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |