Non-Coding RNA Search

rebs20c_l21.y1

Sequence:


               
               AGAATCTTCAGAGCTCTGGCGTGACATCTCAGACGTACAAAAACAGCCTCTCCTGGCACA
GCTCAGTTTTTAAACTCTGACCTGGCAGGTAGACTCCTCGTGCATCTATCTGTTTATTTA
TGTTGAGGTTTGTTCTTAGCCCATATCAGTGGATCTATAAACTCAACATAAGACTGTAGG
GAAGTGTATTTCTTTTTTTCTTCTTCTTCTTCTTTTTTTTTTTTATTTTTATTTGCCTTA
AAAGGCTGTAGTGCCAGCATTTCATTCAGGAGTAGGTCTTCAGATTCCGTTTTCTTGATT
CACTTGGCAGAGATCTCTTCTCCAAAATTTGAGTAGGGTTTCGGAAAGTTGTTCAACTCC
TCTCTTGGCAGCAGAGGGCACAGTACATTTCTCCTCTGCCTGTGCCCCTCAGACCAAGGC
TGTTTCCGGAAGCCACGGCATAGTTCTGCAGCACAGTGAGTTACTTGATTGCCTTTGCTC
TGTGATTTGCCGTAGAGAATGATTTGCATTCTTGTCAACCAAGTATTTTCCTGGTGGTCG
AGTAAGGCATTTAACTCTTCCTTCCAATAGCATGTTCTTAAAACCTACTTAAAATTATCC
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCTTCAGAGCTCTGGCGTGACATCTCAGACGTACAAAAACAGCCTCTCCTGGCACA
GCTCAGTTTTTAAACTCTGACCTGGCAGGTAGACTCCTCGTGCATCTATCTGTTTATTTA
TGTTGAGGTTTGTTCTTAGCCCATATCAGTGGATCTATAAACTCAACATAAGACTGTAGG
GAAGTGTATTTCTTTTTTTCTTCTTCTTCTTCTTTTTTTTTTTTATTTTTATTTGCCTTA
AAAGGCTGTAGTGCCAGCATTTCATTCAGGAGTAGGTCTTCAGATTCCGTTTTCTTGATT
CACTTGGCAGAGATCTCTTCTCCAAAATTTGAGTAGGGTTTCGGAAAGTTGTTCAACTCC
TCTCTTGGCAGCAGAGGGCACAGTACATTTCTCCTCTGCCTGTGCCCCTCAGACCAAGGC
TGTTTCCGGAAGCCACGGCATAGTTCTGCAGCACAGTGAGTTACTTGATTGCCTTTGCTC
TGTGATTTGCCGTAGAGAATGATTTGCATTCTTGTCAACCAAGTATTTTCCTGGTGGTCG
AGTAAGGCATTTAACTCTTCCTTCCAATAGCATGTTCTTAAAACCTACTTAAAATTATCC
T

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-313, + strand, RNAz p=0.998623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-313, + strand, RNAz p=0.998623

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-601, gnl|bosTau2|chr7 (32370428-32369842)
               

               
               1-601, gnl|Hg17|chr5 (134148300-134148882)
               

               
               1-601, gnl|Mm7|chr13 (54742240-54742754)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-601, gnl|bosTau2|chr7 (32370428-32369842)
               

               
               1-601, gnl|Hg17|chr5 (134148300-134148882)
               

               
               1-601, gnl|Mm7|chr13 (54742240-54742754)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-601, gnl\|bosTau2\|chr7 (32370428-32369842)
	1-601, gnl\|Hg17\|chr5 (134148300-134148882)
	1-601, gnl\|Mm7\|chr13 (54742240-54742754)