Non-Coding RNA Search

rebs22c_f2.y1

Sequence:


               
               TTAGCACCTCAAAATACTTCTAAATCCTCAGGAGGAAAATGTGAAGCAAAAAGATATCTA
TTTCCTAAAGCAAAATGCCTATTTTATTCTTTTTCCGAATAATGAAGTTATTTCTTATCC
CATGGTAGAAATGTATAGGTGAGAACTCCCGCTGAGAACTTCTTGATCTGAAAACCTAAG
GAACTTGTGCCATTCTAGGCAAAAAGACAAGAAAACATTGTCTTCTTAGTTGTGCTTACC
TTTCACATTTTTCTGAGAGCTGCTTCCTGGCAACCTTACCCATAACAGAACTAAGAACCA
AGAACAAACAGAGAAAGTCTTTGACTATCCCAATAAATGTTACAAAACCCATGCTCTGAC
gttcccctagtggctcagaaggtaaagaacccgactggtatccatgaggtggcaggttcg
atccc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGCACCTCAAAATACTTCTAAATCCTCAGGAGGAAAATGTGAAGCAAAAAGATATCTA
TTTCCTAAAGCAAAATGCCTATTTTATTCTTTTTCCGAATAATGAAGTTATTTCTTATCC
CATGGTAGAAATGTATAGGTGAGAACTCCCGCTGAGAACTTCTTGATCTGAAAACCTAAG
GAACTTGTGCCATTCTAGGCAAAAAGACAAGAAAACATTGTCTTCTTAGTTGTGCTTACC
TTTCACATTTTTCTGAGAGCTGCTTCCTGGCAACCTTACCCATAACAGAACTAAGAACCA
AGAACAAACAGAGAAAGTCTTTGACTATCCCAATAAATGTTACAAAACCCATGCTCTGAC
gttcccctagtggctcagaaggtaaagaacccgactggtatccatgaggtggcaggttcg
atccc

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-265, gnl|bosTau2|chr14 (16782968-16783230)
               

               
               1-265, gnl|canFam2|chr29 (16116641-16117384)
               

               
               1-265, gnl|dasNov1|scaffold_589 (108466-109147)
               

               
               1-265, gnl|echTel1|scaffold_313406 (47401-46649)
               

               
               1-265, gnl|hg17|chr8 (64056079-64056832)
               

               
               1-265, gnl|Hg17|chr8 (64056537-64056802)
               

               
               1-265, gnl|mm7|chr4 (19997854-19998599)
               

               
               1-265, gnl|Mm7|chr4 (19998263-19998569)
               

               
               1-265, gnl|monDom2|scaffold_4 (99650559-99649837)
               

               
               1-265, gnl|oryCun1|scaffold_195466 (16003-15256)
               

               
               1-265, gnl|panTro1|chr7 (66055661-66056413)
               

               
               1-265, gnl|rheMac2|chr8 (65536921-65537672)
               

               
               1-265, gnl|rn3|chr5 (34758460-34757787)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr14 (16782968-16783230)
               

               
               1-265, gnl|canFam2|chr29 (16116641-16117384)
               

               
               1-265, gnl|dasNov1|scaffold_589 (108466-109147)
               

               
               1-265, gnl|echTel1|scaffold_313406 (47401-46649)
               

               
               1-265, gnl|hg17|chr8 (64056079-64056832)
               

               
               1-265, gnl|Hg17|chr8 (64056537-64056802)
               

               
               1-265, gnl|mm7|chr4 (19997854-19998599)
               

               
               1-265, gnl|Mm7|chr4 (19998263-19998569)
               

               
               1-265, gnl|monDom2|scaffold_4 (99650559-99649837)
               

               
               1-265, gnl|oryCun1|scaffold_195466 (16003-15256)
               

               
               1-265, gnl|panTro1|chr7 (66055661-66056413)
               

               
               1-265, gnl|rheMac2|chr8 (65536921-65537672)
               

               
               1-265, gnl|rn3|chr5 (34758460-34757787)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-265, gnl\|bosTau2\|chr14 (16782968-16783230)
	1-265, gnl\|canFam2\|chr29 (16116641-16117384)
	1-265, gnl\|dasNov1\|scaffold_589 (108466-109147)
	1-265, gnl\|echTel1\|scaffold_313406 (47401-46649)
	1-265, gnl\|hg17\|chr8 (64056079-64056832)
	1-265, gnl\|Hg17\|chr8 (64056537-64056802)
	1-265, gnl\|mm7\|chr4 (19997854-19998599)
	1-265, gnl\|Mm7\|chr4 (19998263-19998569)
	1-265, gnl\|monDom2\|scaffold_4 (99650559-99649837)
	1-265, gnl\|oryCun1\|scaffold_195466 (16003-15256)
	1-265, gnl\|panTro1\|chr7 (66055661-66056413)
	1-265, gnl\|rheMac2\|chr8 (65536921-65537672)
	1-265, gnl\|rn3\|chr5 (34758460-34757787)