Non-Coding RNA Search

rebs23c_e20.y1

Sequence:


               
               TTTTAATTTATGATGTTTTTAAAGCTGTGTAAAAGGAGAATGAAGTGGTGATATTTACAA
AAAAGTTAAAAAAAAGAAAAAAAAAGAAAAAAGAAAAAAAAAGCTTGTATGGGACAGAAT
AGGAATGCCAGTTAGATTTTTTAGAAAACTAAGGGTCGGCTTTTGCGCCATAAAGCATAT
CAAGTGGTAGTTACTCGGACAGTGCATTTCCAGTATCTAACTTAACACGCCATCCCTTAG
CAGTGCAAGCTTATTTATCTCTTTTGTATTGTTGTCTTAAGTAACTGTGTAAATAAATGC
AGCCTGGAAAGTTAAAAAGTGATGTAAGTGATCACAGTTCCCCTTCTGCTCAAAAATCCA
GTGCCTCTAGACAGATGTTACAACTGCATATTTAAACCTGATATCACTCTCTCTCTTGCT
TATGTCAGCTTCTTCTGAAGCCGGTGGCCTCTTGAGAGCTTGGTGGCACACACATTTGTG
AGGATCTCCTTTGAGACTTCATGGAACAGGGTCAGGCACAGAATTCCACATATGCCCTCC
AGTTATCAAGCCAAAATCCCACTTACACGTCGCCATTGACAAGTTTAAAGTTTACTCATT
CTAACTGCGGACTTCATACCAATCCTCAAAAGCTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAATTTATGATGTTTTTAAAGCTGTGTAAAAGGAGAATGAAGTGGTGATATTTACAA
AAAAGTTAAAAAAAAGAAAAAAAAAGAAAAAAGAAAAAAAAAGCTTGTATGGGACAGAAT
AGGAATGCCAGTTAGATTTTTTAGAAAACTAAGGGTCGGCTTTTGCGCCATAAAGCATAT
CAAGTGGTAGTTACTCGGACAGTGCATTTCCAGTATCTAACTTAACACGCCATCCCTTAG
CAGTGCAAGCTTATTTATCTCTTTTGTATTGTTGTCTTAAGTAACTGTGTAAATAAATGC
AGCCTGGAAAGTTAAAAAGTGATGTAAGTGATCACAGTTCCCCTTCTGCTCAAAAATCCA
GTGCCTCTAGACAGATGTTACAACTGCATATTTAAACCTGATATCACTCTCTCTCTTGCT
TATGTCAGCTTCTTCTGAAGCCGGTGGCCTCTTGAGAGCTTGGTGGCACACACATTTGTG
AGGATCTCCTTTGAGACTTCATGGAACAGGGTCAGGCACAGAATTCCACATATGCCCTCC
AGTTATCAAGCCAAAATCCCACTTACACGTCGCCATTGACAAGTTTAAAGTTTACTCATT
CTAACTGCGGACTTCATACCAATCCTCAAAAGCTGACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-256, - strand, RNAz p=0.917192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-256, - strand, RNAz p=0.917192

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-630, gnl|bosTau2|chr7 (47345089-47344460)
               

               
               1-630, gnl|canFam2|chr4 (54966354-54965619)
               

               
               1-630, gnl|dasNov1|scaffold_44 (256601-257319)
               

               
               1-630, gnl|echTel1|scaffold_312022 (45381-46113)
               

               
               1-630, gnl|galGal2|chr13 (9918079-9917322)
               

               
               1-630, gnl|hg17|chr5 (158057405-158058146)
               

               
               1-630, gnl|Hg17|chr5 (158058330-158057693)
               

               
               1-630, gnl|loxAfr1|scaffold_78850 (4104-4826)
               

               
               1-630, gnl|mm7|chr11 (44962888-44962070)
               

               
               1-630, gnl|Mm7|chr11 (44961869-44962614)
               

               
               1-630, gnl|monDom2|scaffold_6 (46465936-46465136)
               

               
               1-630, gnl|oryCun1|scaffold_207474 (295068-294350)
               

               
               1-630, gnl|panTro1|chr4 (165232527-165233269)
               

               
               1-630, gnl|rheMac2|chr6 (155105783-155106516)
               

               
               1-630, gnl|rn3|chr10 (30165201-30164424)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-630, gnl|bosTau2|chr7 (47345089-47344460)
               

               
               1-630, gnl|canFam2|chr4 (54966354-54965619)
               

               
               1-630, gnl|dasNov1|scaffold_44 (256601-257319)
               

               
               1-630, gnl|echTel1|scaffold_312022 (45381-46113)
               

               
               1-630, gnl|galGal2|chr13 (9918079-9917322)
               

               
               1-630, gnl|hg17|chr5 (158057405-158058146)
               

               
               1-630, gnl|Hg17|chr5 (158058330-158057693)
               

               
               1-630, gnl|loxAfr1|scaffold_78850 (4104-4826)
               

               
               1-630, gnl|mm7|chr11 (44962888-44962070)
               

               
               1-630, gnl|Mm7|chr11 (44961869-44962614)
               

               
               1-630, gnl|monDom2|scaffold_6 (46465936-46465136)
               

               
               1-630, gnl|oryCun1|scaffold_207474 (295068-294350)
               

               
               1-630, gnl|panTro1|chr4 (165232527-165233269)
               

               
               1-630, gnl|rheMac2|chr6 (155105783-155106516)
               

               
               1-630, gnl|rn3|chr10 (30165201-30164424)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-630, gnl\|bosTau2\|chr7 (47345089-47344460)
	1-630, gnl\|canFam2\|chr4 (54966354-54965619)
	1-630, gnl\|dasNov1\|scaffold_44 (256601-257319)
	1-630, gnl\|echTel1\|scaffold_312022 (45381-46113)
	1-630, gnl\|galGal2\|chr13 (9918079-9917322)
	1-630, gnl\|hg17\|chr5 (158057405-158058146)
	1-630, gnl\|Hg17\|chr5 (158058330-158057693)
	1-630, gnl\|loxAfr1\|scaffold_78850 (4104-4826)
	1-630, gnl\|mm7\|chr11 (44962888-44962070)
	1-630, gnl\|Mm7\|chr11 (44961869-44962614)
	1-630, gnl\|monDom2\|scaffold_6 (46465936-46465136)
	1-630, gnl\|oryCun1\|scaffold_207474 (295068-294350)
	1-630, gnl\|panTro1\|chr4 (165232527-165233269)
	1-630, gnl\|rheMac2\|chr6 (155105783-155106516)
	1-630, gnl\|rn3\|chr10 (30165201-30164424)