Non-Coding RNA Search

rebs23c_i20.y1

Sequence:


               
               GCCACCAGCAGCCTGTCCAAGGAGGAGAGGCAGGTGGGCTCCGAGCTGGCGGAGTGCGTG
GGGGCCTTCCTGAAGAGCACGAACCAGGTGCTGGGGAAGAAGGGCTTCGAGAAGGACATC
GCCGCCTCCATCGCCATGGCCATCATCGAGCAGAAGATGGACCGGCACATGGAAATGTGC
TACATCTTCGCTTCCGAGAGGAAGTGGGCCTTCTCGGACGCGTGGCTGGCCTGCCTGGTG
AACAACCGGGCTCTCTTCCGAGAGCCGGGCCTGGTTTTGAAGCTGCTGGAAACGGTGACG
GACGTCAGCACGGCAGACGGGGCCGTCCCCGAGGCTCAGGTCAAGCAAGTGATCGCCCTG
ACCCTGGAGTGCTACGCGCACCTCTCGCTGCCGGACAAGAACAAAGTCCTCTCGGGCGTC
CTGCTTTCCTGGGGGCGCAAGGGCCTCTCGGAGAAGCTGCTGGCTCACCTGGAGGGCTTT
CAGGAGGACCTCAACACGACTTTCAACCAGCTGGCGCAGAGCGCCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACCAGCAGCCTGTCCAAGGAGGAGAGGCAGGTGGGCTCCGAGCTGGCGGAGTGCGTG
GGGGCCTTCCTGAAGAGCACGAACCAGGTGCTGGGGAAGAAGGGCTTCGAGAAGGACATC
GCCGCCTCCATCGCCATGGCCATCATCGAGCAGAAGATGGACCGGCACATGGAAATGTGC
TACATCTTCGCTTCCGAGAGGAAGTGGGCCTTCTCGGACGCGTGGCTGGCCTGCCTGGTG
AACAACCGGGCTCTCTTCCGAGAGCCGGGCCTGGTTTTGAAGCTGCTGGAAACGGTGACG
GACGTCAGCACGGCAGACGGGGCCGTCCCCGAGGCTCAGGTCAAGCAAGTGATCGCCCTG
ACCCTGGAGTGCTACGCGCACCTCTCGCTGCCGGACAAGAACAAAGTCCTCTCGGGCGTC
CTGCTTTCCTGGGGGCGCAAGGGCCTCTCGGAGAAGCTGCTGGCTCACCTGGAGGGCTTT
CAGGAGGACCTCAACACGACTTTCAACCAGCTGGCGCAGAGCGCCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-281, + strand, RNAz p=0.717069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-281, + strand, RNAz p=0.717069

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-529, gnl|bosTau2|chr19 (16548981-16549507)
               

               
               3-529, gnl|Hg17|chr17 (596941-596418)
               

               
               3-529, gnl|Mm7|chr11 (76294416-76293893)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-529, gnl|bosTau2|chr19 (16548981-16549507)
               

               
               3-529, gnl|Hg17|chr17 (596941-596418)
               

               
               3-529, gnl|Mm7|chr11 (76294416-76293893)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	3-529, gnl\|bosTau2\|chr19 (16548981-16549507)
	3-529, gnl\|Hg17\|chr17 (596941-596418)
	3-529, gnl\|Mm7\|chr11 (76294416-76293893)