Non-Coding RNA Search

rebs23c_n19.y1

Sequence:


               
               GAGCGGAGCCGGGCCCGGGGCTGGGCCGGCGCCGAGCGCAGCGAAGGCCGGAGGATGGAA
CCAGGCGAGGAGCTGGAGGATGAAGATTCTCCAGGTGGTCGTGAAGATGGCTTCACTGCT
GAGCACCTGGCCGCAGAGGCCATGGCAGCTGACATGGACCCCTGGCTGGTGTTTGATGCC
CGAACCACACCTGCCACGGAGCTGGATGCCTGGTTGGCCAAGTACCCACCATCCCAGGTT
ACCCGCTATGGGGACCCTGGCTCTCCCAACTCTGAGCCCGTGGGCTGGATTGCAGCATAT
GGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGAGCCGGGCCCGGGGCTGGGCCGGCGCCGAGCGCAGCGAAGGCCGGAGGATGGAA
CCAGGCGAGGAGCTGGAGGATGAAGATTCTCCAGGTGGTCGTGAAGATGGCTTCACTGCT
GAGCACCTGGCCGCAGAGGCCATGGCAGCTGACATGGACCCCTGGCTGGTGTTTGATGCC
CGAACCACACCTGCCACGGAGCTGGATGCCTGGTTGGCCAAGTACCCACCATCCCAGGTT
ACCCGCTATGGGGACCCTGGCTCTCCCAACTCTGAGCCCGTGGGCTGGATTGCAGCATAT
GGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               48-165, - strand, RNAz p=0.981695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               48-165, - strand, RNAz p=0.981695

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               48-304, gnl|bosTau2|chr29 (30526461-30526205)
               

               
               48-304, gnl|canFam2|chr18 (54379954-54379591)
               

               
               48-304, gnl|danRer3|chr22 (35764064-35763711)
               

               
               48-304, gnl|dasNov1|scaffold_72227 (6678-7041)
               

               
               48-304, gnl|echTel1|scaffold_292914 (709-346)
               

               
               48-304, gnl|fr1|chrUn (192616192-192616542)
               

               
               48-304, gnl|hg17|chr11 (65441849-65442212)
               

               
               48-304, gnl|Hg17|chr11 (65442269-65442012)
               

               
               48-304, gnl|loxAfr1|scaffold_89591 (4651-5014)
               

               
               48-304, gnl|mm7|chr19 (5321172-5320809)
               

               
               48-304, gnl|Mm7|chr19 (5320750-5321007)
               

               
               48-304, gnl|oryCun1|scaffold_191598 (3856-3493)
               

               
               48-304, gnl|panTro1|chr9 (66688415-66688778)
               

               
               48-304, gnl|rheMac2|chr14 (8533134-8532771)
               

               
               48-304, gnl|rn3|chr1 (208225441-208225078)
               

               
               48-304, gnl|xenTro1|scaffold_521 (4272-3911)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-304, gnl|bosTau2|chr29 (30526461-30526205)
               

               
               48-304, gnl|canFam2|chr18 (54379954-54379591)
               

               
               48-304, gnl|danRer3|chr22 (35764064-35763711)
               

               
               48-304, gnl|dasNov1|scaffold_72227 (6678-7041)
               

               
               48-304, gnl|echTel1|scaffold_292914 (709-346)
               

               
               48-304, gnl|fr1|chrUn (192616192-192616542)
               

               
               48-304, gnl|hg17|chr11 (65441849-65442212)
               

               
               48-304, gnl|Hg17|chr11 (65442269-65442012)
               

               
               48-304, gnl|loxAfr1|scaffold_89591 (4651-5014)
               

               
               48-304, gnl|mm7|chr19 (5321172-5320809)
               

               
               48-304, gnl|Mm7|chr19 (5320750-5321007)
               

               
               48-304, gnl|oryCun1|scaffold_191598 (3856-3493)
               

               
               48-304, gnl|panTro1|chr9 (66688415-66688778)
               

               
               48-304, gnl|rheMac2|chr14 (8533134-8532771)
               

               
               48-304, gnl|rn3|chr1 (208225441-208225078)
               

               
               48-304, gnl|xenTro1|scaffold_521 (4272-3911)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	48-304, gnl\|bosTau2\|chr29 (30526461-30526205)
	48-304, gnl\|canFam2\|chr18 (54379954-54379591)
	48-304, gnl\|danRer3\|chr22 (35764064-35763711)
	48-304, gnl\|dasNov1\|scaffold_72227 (6678-7041)
	48-304, gnl\|echTel1\|scaffold_292914 (709-346)
	48-304, gnl\|fr1\|chrUn (192616192-192616542)
	48-304, gnl\|hg17\|chr11 (65441849-65442212)
	48-304, gnl\|Hg17\|chr11 (65442269-65442012)
	48-304, gnl\|loxAfr1\|scaffold_89591 (4651-5014)
	48-304, gnl\|mm7\|chr19 (5321172-5320809)
	48-304, gnl\|Mm7\|chr19 (5320750-5321007)
	48-304, gnl\|oryCun1\|scaffold_191598 (3856-3493)
	48-304, gnl\|panTro1\|chr9 (66688415-66688778)
	48-304, gnl\|rheMac2\|chr14 (8533134-8532771)
	48-304, gnl\|rn3\|chr1 (208225441-208225078)
	48-304, gnl\|xenTro1\|scaffold_521 (4272-3911)