Non-Coding RNA Search

rebs25c_c13.y1

Sequence:


               
               TAAGAGTCGCGCTGTAAGAAGCAACAACCTCTCTTCTCCGCCATCTGCTCGGCGCCGCAA
AACAGCAACTATGCGTGAGTGCATCTCCATCCACGTTGGCCAAGCTGGTGTCCAGATCGG
CAATGCCTGCTGGGAGCTCTACTGCCTGGAACACGGCATCCAGCCCGATGGCCAGATGCC
GAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTGAGACAGG
CGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGA
AGTTCGCACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGA
AGATGCTGCCAATAACTATGCCCGAGGTCACTACACCATTGGCAAGGAGATCATTGACCT
CGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGGGCTTCTTGGT
TTTCCACAGCTTTGGCGGGGGAACGGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCT
CTCTGTCGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGT
TTCCACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAGTCGCGCTGTAAGAAGCAACAACCTCTCTTCTCCGCCATCTGCTCGGCGCCGCAA
AACAGCAACTATGCGTGAGTGCATCTCCATCCACGTTGGCCAAGCTGGTGTCCAGATCGG
CAATGCCTGCTGGGAGCTCTACTGCCTGGAACACGGCATCCAGCCCGATGGCCAGATGCC
GAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTGAGACAGG
CGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGA
AGTTCGCACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGA
AGATGCTGCCAATAACTATGCCCGAGGTCACTACACCATTGGCAAGGAGATCATTGACCT
CGTCTTGGACCGAATTCGGAAACTGGCTGACCAGTGCACAGGTCTTCAGGGCTTCTTGGT
TTTCCACAGCTTTGGCGGGGGAACGGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCT
CTCTGTCGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGT
TTCCACAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-243, - strand, RNAz p=0.971316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-243, - strand, RNAz p=0.971316

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-609, gnl|bosTau2|chr10 (46593860-46593251)
               

               
               1-609, gnl|Hg17|chr12 (47869106-47865877)
               

               
               1-609, gnl|Mm7|chr15 (98938788-98936111)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-609, gnl|bosTau2|chr10 (46593860-46593251)
               

               
               1-609, gnl|Hg17|chr12 (47869106-47865877)
               

               
               1-609, gnl|Mm7|chr15 (98938788-98936111)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-609, gnl\|bosTau2\|chr10 (46593860-46593251)
	1-609, gnl\|Hg17\|chr12 (47869106-47865877)
	1-609, gnl\|Mm7\|chr15 (98938788-98936111)