Non-Coding RNA Search

rebs25c_l5.y1

Sequence:


               
               CTTCCCAGAAAAGAAAAGTAAATACAACATGGCAGTAGAATAATATTGCACTTAACCACA
GGTATGAATTCAGAAGCAAAATAAGAACATTTTCTGTATTCCTGAAATGGCACAAAATGC
CTCAGTAAGGAGGCTAAATATTTATTCCTTAGCCAAGAATAATAAACCACTCCCACTTTT
ATATACATAAGAATTATCTGGggagtgcccatcgtggctcaatggttaacgaatccgact
aggaaccatgaggttgcgggttcgatccctggccttgctcaataggttaaggatccagcg
ttgccatggctctggtgtaggccggcggctacaactctgattagactcctagcctgggaa
cctccatatgccgtgggaagtggccctagataaaaggcaaaaagacAAAAAAAAAAAAAA
AAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCAGAAAAGAAAAGTAAATACAACATGGCAGTAGAATAATATTGCACTTAACCACA
GGTATGAATTCAGAAGCAAAATAAGAACATTTTCTGTATTCCTGAAATGGCACAAAATGC
CTCAGTAAGGAGGCTAAATATTTATTCCTTAGCCAAGAATAATAAACCACTCCCACTTTT
ATATACATAAGAATTATCTGGggagtgcccatcgtggctcaatggttaacgaatccgact
aggaaccatgaggttgcgggttcgatccctggccttgctcaataggttaaggatccagcg
ttgccatggctctggtgtaggccggcggctacaactctgattagactcctagcctgggaa
cctccatatgccgtgggaagtggccctagataaaaggcaaaaagacAAAAAAAAAAAAAA
AAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               59-169, - strand, RNAz p=0.943335

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-169, - strand, RNAz p=0.943335

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               12-200, gnl|bosTau2|chr14 (34178957-34178775)
               

               
               12-200, gnl|canFam2|chr13 (12718033-12718166)
               

               
               12-200, gnl|dasNov1|scaffold_10609 (5842-5717)
               

               
               12-200, gnl|echTel1|scaffold_279344 (8235-8363)
               

               
               12-200, gnl|galGal2|chr2 (130958424-130958534)
               

               
               12-200, gnl|hg17|chr8 (110206072-110206199)
               

               
               12-200, gnl|Hg17|chr8 (110206092-110206270)
               

               
               12-200, gnl|loxAfr1|scaffold_1998 (15115-14990)
               

               
               12-200, gnl|mm7|chr15 (44279122-44279241)
               

               
               12-200, gnl|Mm7|chr15 (44279133-44279309)
               

               
               12-200, gnl|oryCun1|scaffold_207882 (60731-60601)
               

               
               12-200, gnl|panTro1|chr7 (112688711-112688838)
               

               
               12-200, gnl|rheMac2|chr8 (111529006-111529140)
               

               
               12-200, gnl|rn3|chr7 (80114964-80115076)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-200, gnl|bosTau2|chr14 (34178957-34178775)
               

               
               12-200, gnl|canFam2|chr13 (12718033-12718166)
               

               
               12-200, gnl|dasNov1|scaffold_10609 (5842-5717)
               

               
               12-200, gnl|echTel1|scaffold_279344 (8235-8363)
               

               
               12-200, gnl|galGal2|chr2 (130958424-130958534)
               

               
               12-200, gnl|hg17|chr8 (110206072-110206199)
               

               
               12-200, gnl|Hg17|chr8 (110206092-110206270)
               

               
               12-200, gnl|loxAfr1|scaffold_1998 (15115-14990)
               

               
               12-200, gnl|mm7|chr15 (44279122-44279241)
               

               
               12-200, gnl|Mm7|chr15 (44279133-44279309)
               

               
               12-200, gnl|oryCun1|scaffold_207882 (60731-60601)
               

               
               12-200, gnl|panTro1|chr7 (112688711-112688838)
               

               
               12-200, gnl|rheMac2|chr8 (111529006-111529140)
               

               
               12-200, gnl|rn3|chr7 (80114964-80115076)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	12-200, gnl\|bosTau2\|chr14 (34178957-34178775)
	12-200, gnl\|canFam2\|chr13 (12718033-12718166)
	12-200, gnl\|dasNov1\|scaffold_10609 (5842-5717)
	12-200, gnl\|echTel1\|scaffold_279344 (8235-8363)
	12-200, gnl\|galGal2\|chr2 (130958424-130958534)
	12-200, gnl\|hg17\|chr8 (110206072-110206199)
	12-200, gnl\|Hg17\|chr8 (110206092-110206270)
	12-200, gnl\|loxAfr1\|scaffold_1998 (15115-14990)
	12-200, gnl\|mm7\|chr15 (44279122-44279241)
	12-200, gnl\|Mm7\|chr15 (44279133-44279309)
	12-200, gnl\|oryCun1\|scaffold_207882 (60731-60601)
	12-200, gnl\|panTro1\|chr7 (112688711-112688838)
	12-200, gnl\|rheMac2\|chr8 (111529006-111529140)
	12-200, gnl\|rn3\|chr7 (80114964-80115076)