Non-Coding RNA Search

rebs25c_n24.y1

Sequence:


               
               GCAAGGTTCAAGTCTCTGCTTTCTTCCTTAAAAAAAAAAAAAGAAGAAGAAGAAAAAGAA
GAAGAAGGAAGAAAGAAAAAGACAGAAAGAGAAATAGGAGGAGGCTGCACTCCTCATTTT
CAGCTTGGGCGAAGATGGATCCACGTTTCATCTTTAATCACGCCAAGCCCAGGCCCATCT
GTCTTGTTTACTCTGCCGAGGAGAGGACGGGCCTCGGTGGCGACCATTACCTCGACACCC
GGCTAACAAATGAGGCCCGGCCCGGCCGCCGCCGCCTCTGCTGCTGCCGCTGCTGGAAGA
CAGCCTGGATTTTCTTTCTTGGTCCCCCATTCCTGACACCCAGCGAAAGCACCCTCTGAC
TGCCAGATAGCACAGGGTTTGGGCCACGGTAACAAACATACACACACGCGCGCACACACA
CACACACACACCCTCCCTCCCCCTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGGTTCAAGTCTCTGCTTTCTTCCTTAAAAAAAAAAAAAGAAGAAGAAGAAAAAGAA
GAAGAAGGAAGAAAGAAAAAGACAGAAAGAGAAATAGGAGGAGGCTGCACTCCTCATTTT
CAGCTTGGGCGAAGATGGATCCACGTTTCATCTTTAATCACGCCAAGCCCAGGCCCATCT
GTCTTGTTTACTCTGCCGAGGAGAGGACGGGCCTCGGTGGCGACCATTACCTCGACACCC
GGCTAACAAATGAGGCCCGGCCCGGCCGCCGCCGCCTCTGCTGCTGCCGCTGCTGGAAGA
CAGCCTGGATTTTCTTTCTTGGTCCCCCATTCCTGACACCCAGCGAAAGCACCCTCTGAC
TGCCAGATAGCACAGGGTTTGGGCCACGGTAACAAACATACACACACGCGCGCACACACA
CACACACACACCCTCCCTCCCCCTCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               49-189, - strand, RNAz p=0.981149

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-189, - strand, RNAz p=0.981149

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               95-189, AL560029 Homo sapiens B CELLS (RAMOS CELL LINE) Homo sapiens cDNA 
(emb|AL560029.3|), blast E-value=2e-31, identity=94.79% 
               

               
               95-189, BX342595 Homo sapiens B CELLS (RAMOS CELL LINE) COT 25-NORMALIZED 
(emb|BX342595.2|), blast E-value=2e-31, identity=94.79% 
               

               
               95-189, BX372277 Homo sapiens B CELLS (RAMOS CELL LINE) COT 25-NORMALIZED 
(emb|BX372277.1|), blast E-value=2e-31, identity=94.79% 
               

               
               117-189, BX525170 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 
(emb|BX525170.1|), blast E-value=1e-17, identity=91.78% 
               

               
               95-189, IL-BT122-090299-007 BT122 Homo sapiens cDNA, mRNA sequence 
(gb|AI906630.1|), blast E-value=2e-31, identity=94.79% 
               

               
               98-189, UI-CF-EN1-aeg-p-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone 
(gb|CB305868.1|), blast E-value=4e-26, identity=92.47%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               95-189, AL560029 Homo sapiens B CELLS (RAMOS CELL LINE) Homo sapiens cDNA 
(emb|AL560029.3|), blast E-value=2e-31, identity=94.79% 
               

               
               95-189, BX342595 Homo sapiens B CELLS (RAMOS CELL LINE) COT 25-NORMALIZED 
(emb|BX342595.2|), blast E-value=2e-31, identity=94.79% 
               

               
               95-189, BX372277 Homo sapiens B CELLS (RAMOS CELL LINE) COT 25-NORMALIZED 
(emb|BX372277.1|), blast E-value=2e-31, identity=94.79% 
               

               
               117-189, BX525170 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone 
(emb|BX525170.1|), blast E-value=1e-17, identity=91.78% 
               

               
               95-189, IL-BT122-090299-007 BT122 Homo sapiens cDNA, mRNA sequence 
(gb|AI906630.1|), blast E-value=2e-31, identity=94.79% 
               

               
               98-189, UI-CF-EN1-aeg-p-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone 
(gb|CB305868.1|), blast E-value=4e-26, identity=92.47%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-407, gnl|bosTau2|chr19 (31195399-31195003)
               

               
               1-407, gnl|Hg17|chr17 (44008866-44008472)
               

               
               1-407, gnl|Mm7|chr11 (96429582-96430050)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-407, gnl|bosTau2|chr19 (31195399-31195003)
               

               
               1-407, gnl|Hg17|chr17 (44008866-44008472)
               

               
               1-407, gnl|Mm7|chr11 (96429582-96430050)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	95-189, AL560029 Homo sapiens B CELLS (RAMOS CELL LINE) Homo sapiens cDNA (emb\|AL560029.3\|), blast E-value=2e-31, identity=94.79%
	95-189, BX342595 Homo sapiens B CELLS (RAMOS CELL LINE) COT 25-NORMALIZED (emb\|BX342595.2\|), blast E-value=2e-31, identity=94.79%
	95-189, BX372277 Homo sapiens B CELLS (RAMOS CELL LINE) COT 25-NORMALIZED (emb\|BX372277.1\|), blast E-value=2e-31, identity=94.79%
	117-189, BX525170 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone (emb\|BX525170.1\|), blast E-value=1e-17, identity=91.78%
	95-189, IL-BT122-090299-007 BT122 Homo sapiens cDNA, mRNA sequence (gb\|AI906630.1\|), blast E-value=2e-31, identity=94.79%
	98-189, UI-CF-EN1-aeg-p-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone (gb\|CB305868.1\|), blast E-value=4e-26, identity=92.47%

	1-407, gnl\|bosTau2\|chr19 (31195399-31195003)
	1-407, gnl\|Hg17\|chr17 (44008866-44008472)
	1-407, gnl\|Mm7\|chr11 (96429582-96430050)