Non-Coding RNA Search

rebs26c_c7.y1

Sequence:


               
               GGGTTGCGGAGTCCTGGTAGAGGCCAGCTCTGTGATAGCTGGAAAGAAAGGGAGGAAACC
AGTTGCTCTTGCTATGGTTGCTTGTCATTGATAGAAGGACTCATGGGCTTGGATTGGTTT
AAAGGCTAAACACGGAGTTGCAAACTTCTTCCAAGTATTAGGTTCTGGCCAAACTTGTGG
AAGTTTGTAGATGATGAAGACCTGGTGGGCTGCAGAACCATTTTGAGGAGGTGACTAAGG
GTCACCTCCCCTTTGTTTTTTCCCCTGAAGTCAGAGGAATGCAGCTATGCCAAAACTCAG
AGAAGAGCCACACTTAGCTTCTGCTTTGGGGAAAACTGGTCAGCTAAAGCTCTGGTAGTT
CCTTTGTGGCTTTCTGTATACTTTTGCCTGGTTGAAGTCTGTGGCTAAAGAAGAATTGAA
CCTTTCCTGAGAATTCTGTAACAAAATATGTTTTCGATTAAAAGAGGAAGCCAATTAAAA
AAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTGCGGAGTCCTGGTAGAGGCCAGCTCTGTGATAGCTGGAAAGAAAGGGAGGAAACC
AGTTGCTCTTGCTATGGTTGCTTGTCATTGATAGAAGGACTCATGGGCTTGGATTGGTTT
AAAGGCTAAACACGGAGTTGCAAACTTCTTCCAAGTATTAGGTTCTGGCCAAACTTGTGG
AAGTTTGTAGATGATGAAGACCTGGTGGGCTGCAGAACCATTTTGAGGAGGTGACTAAGG
GTCACCTCCCCTTTGTTTTTTCCCCTGAAGTCAGAGGAATGCAGCTATGCCAAAACTCAG
AGAAGAGCCACACTTAGCTTCTGCTTTGGGGAAAACTGGTCAGCTAAAGCTCTGGTAGTT
CCTTTGTGGCTTTCTGTATACTTTTGCCTGGTTGAAGTCTGTGGCTAAAGAAGAATTGAA
CCTTTCCTGAGAATTCTGTAACAAAATATGTTTTCGATTAAAAGAGGAAGCCAATTAAAA
AAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.941084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.941084

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-171, gnl|bosTau2|chr24 (33023443-33023613)
               

               
               1-171, gnl|canFam2|chr1 (26907476-26906782)
               

               
               1-171, gnl|dasNov1|scaffold_13561 (1132-517)
               

               
               1-171, gnl|echTel1|scaffold_313607 (40917-40344)
               

               
               1-171, gnl|hg17|chr18 (46864640-46865315)
               

               
               1-171, gnl|Hg17|chr18 (46864882-46865051)
               

               
               1-171, gnl|loxAfr1|scaffold_8244 (38480-37705)
               

               
               1-171, gnl|mm7|chr18 (74029859-74029227)
               

               
               1-171, gnl|Mm7|chr18 (74029615-74029438)
               

               
               1-171, gnl|oryCun1|scaffold_182097 (682-4)
               

               
               1-171, gnl|panTro1|chr17 (43461362-43462037)
               

               
               1-171, gnl|rheMac2|chr18 (44190234-44190904)
               

               
               1-171, gnl|rn3|chr18 (70501108-70500474)
               


               
               254-479, gnl|bosTau2|chr24 (33023745-33023967)
               

               
               254-479, gnl|Hg17|chr18 (46865184-46865410)
               

               
               254-479, gnl|Mm7|chr18 (74029314-74029126)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-171, gnl|bosTau2|chr24 (33023443-33023613)
               

               
               1-171, gnl|canFam2|chr1 (26907476-26906782)
               

               
               1-171, gnl|dasNov1|scaffold_13561 (1132-517)
               

               
               1-171, gnl|echTel1|scaffold_313607 (40917-40344)
               

               
               1-171, gnl|hg17|chr18 (46864640-46865315)
               

               
               1-171, gnl|Hg17|chr18 (46864882-46865051)
               

               
               1-171, gnl|loxAfr1|scaffold_8244 (38480-37705)
               

               
               1-171, gnl|mm7|chr18 (74029859-74029227)
               

               
               1-171, gnl|Mm7|chr18 (74029615-74029438)
               

               
               1-171, gnl|oryCun1|scaffold_182097 (682-4)
               

               
               1-171, gnl|panTro1|chr17 (43461362-43462037)
               

               
               1-171, gnl|rheMac2|chr18 (44190234-44190904)
               

               
               1-171, gnl|rn3|chr18 (70501108-70500474)
               


               
               254-479, gnl|bosTau2|chr24 (33023745-33023967)
               

               
               254-479, gnl|Hg17|chr18 (46865184-46865410)
               

               
               254-479, gnl|Mm7|chr18 (74029314-74029126)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-171, gnl\|bosTau2\|chr24 (33023443-33023613)
	1-171, gnl\|canFam2\|chr1 (26907476-26906782)
	1-171, gnl\|dasNov1\|scaffold_13561 (1132-517)
	1-171, gnl\|echTel1\|scaffold_313607 (40917-40344)
	1-171, gnl\|hg17\|chr18 (46864640-46865315)
	1-171, gnl\|Hg17\|chr18 (46864882-46865051)
	1-171, gnl\|loxAfr1\|scaffold_8244 (38480-37705)
	1-171, gnl\|mm7\|chr18 (74029859-74029227)
	1-171, gnl\|Mm7\|chr18 (74029615-74029438)
	1-171, gnl\|oryCun1\|scaffold_182097 (682-4)
	1-171, gnl\|panTro1\|chr17 (43461362-43462037)
	1-171, gnl\|rheMac2\|chr18 (44190234-44190904)
	1-171, gnl\|rn3\|chr18 (70501108-70500474)

	254-479, gnl\|bosTau2\|chr24 (33023745-33023967)
	254-479, gnl\|Hg17\|chr18 (46865184-46865410)
	254-479, gnl\|Mm7\|chr18 (74029314-74029126)