Non-Coding RNA Search

rebs27c_n15.y1

Sequence:


               
               GGAAGGAAGAACACTAGGCCTGTTTTAGCTTTCAAGATTATTCAAATGGAATAGATTTTC
ACCATCAACACCCTAGCAAAGACAGAATGCTTAAGGTAAATTGCCAGTTTTTGTCTTTTT
GGAAAATCCATTAATACTGAATGATCTTGGTTTTAATCCATTCCAAAAAAAAAAAAAAAA
GAAAGAAAGAAAGAAAAAAGACTGAACCACAGGATTCAGAGTATGTCCCTGGAAATCACT
TTAGAAAGTAGCTTCCAAGTCAGTACTCATTCTTCTTGAATATCCCACCCCCAAGACCAT
CCCATCCCTTCTAGATACAGGATTATTTTCTCTCCTCTTAAGGGAGGACTGGCCCAGAGA
CCAAAAGAATGAATAGCATAAGGAGGACTTTACCACGACCTTAGCTGCAGAGCTGTTTGA
ATCTAGAGAACCCATATGTGTGTGCTGTGTCTACATCGAGGTGATGGTAGTGCAGTCTCT
GGCTAATGTTCAGTCTCCATGGTTTGTGACCTCATGGCTTCAACTTCCGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAAGAACACTAGGCCTGTTTTAGCTTTCAAGATTATTCAAATGGAATAGATTTTC
ACCATCAACACCCTAGCAAAGACAGAATGCTTAAGGTAAATTGCCAGTTTTTGTCTTTTT
GGAAAATCCATTAATACTGAATGATCTTGGTTTTAATCCATTCCAAAAAAAAAAAAAAAA
GAAAGAAAGAAAGAAAAAAGACTGAACCACAGGATTCAGAGTATGTCCCTGGAAATCACT
TTAGAAAGTAGCTTCCAAGTCAGTACTCATTCTTCTTGAATATCCCACCCCCAAGACCAT
CCCATCCCTTCTAGATACAGGATTATTTTCTCTCCTCTTAAGGGAGGACTGGCCCAGAGA
CCAAAAGAATGAATAGCATAAGGAGGACTTTACCACGACCTTAGCTGCAGAGCTGTTTGA
ATCTAGAGAACCCATATGTGTGTGCTGTGTCTACATCGAGGTGATGGTAGTGCAGTCTCT
GGCTAATGTTCAGTCTCCATGGTTTGTGACCTCATGGCTTCAACTTCCGCACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-150, + strand, RNAz p=0.837087

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-150, + strand, RNAz p=0.837087

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-168, gnl|bosTau2|chr15 (48055545-48055712)
               

               
               1-168, gnl|canFam2|chr18 (46234981-46234508)
               

               
               1-168, gnl|dasNov1|scaffold_28209 (14644-15134)
               

               
               1-168, gnl|echTel1|scaffold_264522 (3701-3233)
               

               
               1-168, gnl|hg17|chr11 (46220270-46220751)
               

               
               1-168, gnl|Hg17|chr11 (46220428-46220626)
               

               
               1-168, gnl|loxAfr1|scaffold_137699 (4938-5402)
               

               
               1-168, gnl|mm7|chr2 (91907517-91907010)
               

               
               1-168, gnl|Mm7|chr2 (91907379-91907192)
               

               
               1-168, gnl|oryCun1|scaffold_201068 (77707-78149)
               

               
               1-168, gnl|panTro1|chr9 (46725734-46726208)
               

               
               1-168, gnl|rheMac2|chr14 (25892268-25891779)
               

               
               1-168, gnl|rn3|chr3 (76333191-76332681)
               


               
               214-492, gnl|bosTau2|chr15 (48055712-48055968)
               

               
               214-492, gnl|Hg17|chr11 (46220626-46220924)
               

               
               214-492, gnl|Mm7|chr2 (91907192-91906847)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr15 (48055545-48055712)
               

               
               1-168, gnl|canFam2|chr18 (46234981-46234508)
               

               
               1-168, gnl|dasNov1|scaffold_28209 (14644-15134)
               

               
               1-168, gnl|echTel1|scaffold_264522 (3701-3233)
               

               
               1-168, gnl|hg17|chr11 (46220270-46220751)
               

               
               1-168, gnl|Hg17|chr11 (46220428-46220626)
               

               
               1-168, gnl|loxAfr1|scaffold_137699 (4938-5402)
               

               
               1-168, gnl|mm7|chr2 (91907517-91907010)
               

               
               1-168, gnl|Mm7|chr2 (91907379-91907192)
               

               
               1-168, gnl|oryCun1|scaffold_201068 (77707-78149)
               

               
               1-168, gnl|panTro1|chr9 (46725734-46726208)
               

               
               1-168, gnl|rheMac2|chr14 (25892268-25891779)
               

               
               1-168, gnl|rn3|chr3 (76333191-76332681)
               


               
               214-492, gnl|bosTau2|chr15 (48055712-48055968)
               

               
               214-492, gnl|Hg17|chr11 (46220626-46220924)
               

               
               214-492, gnl|Mm7|chr2 (91907192-91906847)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-168, gnl\|bosTau2\|chr15 (48055545-48055712)
	1-168, gnl\|canFam2\|chr18 (46234981-46234508)
	1-168, gnl\|dasNov1\|scaffold_28209 (14644-15134)
	1-168, gnl\|echTel1\|scaffold_264522 (3701-3233)
	1-168, gnl\|hg17\|chr11 (46220270-46220751)
	1-168, gnl\|Hg17\|chr11 (46220428-46220626)
	1-168, gnl\|loxAfr1\|scaffold_137699 (4938-5402)
	1-168, gnl\|mm7\|chr2 (91907517-91907010)
	1-168, gnl\|Mm7\|chr2 (91907379-91907192)
	1-168, gnl\|oryCun1\|scaffold_201068 (77707-78149)
	1-168, gnl\|panTro1\|chr9 (46725734-46726208)
	1-168, gnl\|rheMac2\|chr14 (25892268-25891779)
	1-168, gnl\|rn3\|chr3 (76333191-76332681)

	214-492, gnl\|bosTau2\|chr15 (48055712-48055968)
	214-492, gnl\|Hg17\|chr11 (46220626-46220924)
	214-492, gnl\|Mm7\|chr2 (91907192-91906847)