rebs28c_c10.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCTCCGGCCCGGAGCCGGTATCAGCACCGCGGACAGCACAGCGACGGTCGCCGGCAC CTAGGCGCCCTCTCGCCCACCAGCCCACGGGCGCCCCGGCCCGCGGCGTCCGCATCAGCA CCGCGGACAGCGCCCCGGGCGCCCGCTCGCCGCCGCCAGCCCACTTGCACCCCGAGTCAG TTCCGCGGACATCCCGCCTCGACGGGCCCCGCAGCAGGCTCGGAGCGGTCAGCGCCCCCG GAACATGGCCACCGAGGTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCGCTGGCCAC TAAAGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTCCAGACCAAATT CCCCCCAGAGCTGGACAGCCGGATCGAGCGGCAGCTCTTTGAAGAGACTGTGAAGACGCT CAACAGCTTCTACGCAGAGGCCGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCTGCCT GGCCTGCGCCACCGCCTACTTCATCTTCCTCTGCATGGAGACCCACTACGAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCTCCGGCCCGGAGCCGGTATCAGCACCGCGGACAGCACAGCGACGGTCGCCGGCAC CTAGGCGCCCTCTCGCCCACCAGCCCACGGGCGCCCCGGCCCGCGGCGTCCGCATCAGCA CCGCGGACAGCGCCCCGGGCGCCCGCTCGCCGCCGCCAGCCCACTTGCACCCCGAGTCAG TTCCGCGGACATCCCGCCTCGACGGGCCCCGCAGCAGGCTCGGAGCGGTCAGCGCCCCCG GAACATGGCCACCGAGGTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCGCTGGCCAC TAAAGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTCCAGACCAAATT CCCCCCAGAGCTGGACAGCCGGATCGAGCGGCAGCTCTTTGAAGAGACTGTGAAGACGCT CAACAGCTTCTACGCAGAGGCCGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCTGCCT GGCCTGCGCCACCGCCTACTTCATCTTCCTCTGCATGGAGACCCACTACGAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 417-534, - strand, RNAz p=0.995425 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 417-534, - strand, RNAz p=0.995425 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-258, gnl|bosTau2|chr26 (10284598-10284341) | |
| 1-258, gnl|Hg17|chr10 (99599811-99600064) | |
| 1-258, gnl|Mm7|chr19 (42149740-42149984) | |
| 379-534, gnl|bosTau2|chr26 (10275171-10275016) | |
| 379-534, gnl|canFam2|chr28 (14074614-14074782) | |
| 379-534, gnl|danRer3|chr1 (54994131-54994289) | |
| 379-534, gnl|dasNov1|scaffold_9389 (58994-59153) | |
| 379-534, gnl|echTel1|scaffold_23604 (794-947) | |
| 379-534, gnl|fr1|chrUn (164780562-164780719) | |
| 379-534, gnl|galGal2|chr6 (21430323-21430165) | |
| 379-534, gnl|hg17|chr10 (99613674-99613840) | |
| 379-534, gnl|Hg17|chr10 (99613673-99613828) | |
| 379-534, gnl|loxAfr1|scaffold_18567 (23752-23583) | |
| 379-534, gnl|mm7|chr19 (42160621-42160780) | |
| 379-534, gnl|Mm7|chr19 (42160620-42160775) | |
| 379-534, gnl|monDom2|scaffold_14 (24570063-24569895) | |
| 379-534, gnl|oryCun1|scaffold_189927 (13687-13517) | |
| 379-534, gnl|panTro1|chr8 (101349465-101349631) | |
| 379-534, gnl|rheMac2|chr9 (97459385-97459551) | |
| 379-534, gnl|rn3|chr1 (248846072-248845913) | |
| 379-534, gnl|tetNig1|chr18 (1936211-1936054) | |
| 379-534, gnl|xenTro1|scaffold_51 (1697823-1697982) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-258, gnl|bosTau2|chr26 (10284598-10284341) | |
| 1-258, gnl|Hg17|chr10 (99599811-99600064) | |
| 1-258, gnl|Mm7|chr19 (42149740-42149984) | |
| 379-534, gnl|bosTau2|chr26 (10275171-10275016) | |
| 379-534, gnl|canFam2|chr28 (14074614-14074782) | |
| 379-534, gnl|danRer3|chr1 (54994131-54994289) | |
| 379-534, gnl|dasNov1|scaffold_9389 (58994-59153) | |
| 379-534, gnl|echTel1|scaffold_23604 (794-947) | |
| 379-534, gnl|fr1|chrUn (164780562-164780719) | |
| 379-534, gnl|galGal2|chr6 (21430323-21430165) | |
| 379-534, gnl|hg17|chr10 (99613674-99613840) | |
| 379-534, gnl|Hg17|chr10 (99613673-99613828) | |
| 379-534, gnl|loxAfr1|scaffold_18567 (23752-23583) | |
| 379-534, gnl|mm7|chr19 (42160621-42160780) | |
| 379-534, gnl|Mm7|chr19 (42160620-42160775) | |
| 379-534, gnl|monDom2|scaffold_14 (24570063-24569895) | |
| 379-534, gnl|oryCun1|scaffold_189927 (13687-13517) | |
| 379-534, gnl|panTro1|chr8 (101349465-101349631) | |
| 379-534, gnl|rheMac2|chr9 (97459385-97459551) | |
| 379-534, gnl|rn3|chr1 (248846072-248845913) | |
| 379-534, gnl|tetNig1|chr18 (1936211-1936054) | |
| 379-534, gnl|xenTro1|scaffold_51 (1697823-1697982) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |