Non-Coding RNA Search

rebs28c_c5.y1

Sequence:


               
               GGGTCTCCGGTGTCCCCCTCTGCCTCCCCACTGTCCGACCTCAGCGAAGGGAACTCCGGT
GTCCCTGGGCCCCAGCGTCCATCCAGGGGCCCTGCTGACCCCACTTCTTCCTGCCAGGCC
AACAGTGTCCCCACCAGTGACTCTGTCAGAGGCCCCCCATCTGGCACCACCACATCAGCC
TTGGACCAGAGGCGGCCCCGGTACCAGACCGGGGCCTGGAGTCGCCAGTGCCGGATAGAG
GAAGAGGAGGAGGTGGAGCAGGACTTGCTGAGCCAAAGCTGGGGAAGAGAGGTGGAAAAT
GGCCCCACCGACCCCTCCAACTCCTCCACCTTGCACCACCTCCGCCCCACAGATGGCACC
TCTGGGCAGAACAACAAAGCTGGGACCGGGATGAGCAAATCAGCCTCGTTTGCCTTTGAG
TTCCCCAAGGACAGAAGTGGGATTGAGACATTCTCACCTCCCCCGCCACCTCCTAAATCA
CGGCACCTTTTAAAAATGAACAAAAGCAGCTCTGATTTGGAGAAAGTGAGCCACGGCTCC
GCCGAGAGCCTTAGCCCATCCTTCAGGGGTATCCACGTCAGCTTCACCACAGGCTCCACC
GACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCTCCGGTGTCCCCCTCTGCCTCCCCACTGTCCGACCTCAGCGAAGGGAACTCCGGT
GTCCCTGGGCCCCAGCGTCCATCCAGGGGCCCTGCTGACCCCACTTCTTCCTGCCAGGCC
AACAGTGTCCCCACCAGTGACTCTGTCAGAGGCCCCCCATCTGGCACCACCACATCAGCC
TTGGACCAGAGGCGGCCCCGGTACCAGACCGGGGCCTGGAGTCGCCAGTGCCGGATAGAG
GAAGAGGAGGAGGTGGAGCAGGACTTGCTGAGCCAAAGCTGGGGAAGAGAGGTGGAAAAT
GGCCCCACCGACCCCTCCAACTCCTCCACCTTGCACCACCTCCGCCCCACAGATGGCACC
TCTGGGCAGAACAACAAAGCTGGGACCGGGATGAGCAAATCAGCCTCGTTTGCCTTTGAG
TTCCCCAAGGACAGAAGTGGGATTGAGACATTCTCACCTCCCCCGCCACCTCCTAAATCA
CGGCACCTTTTAAAAATGAACAAAAGCAGCTCTGATTTGGAGAAAGTGAGCCACGGCTCC
GCCGAGAGCCTTAGCCCATCCTTCAGGGGTATCCACGTCAGCTTCACCACAGGCTCCACC
GACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               61-337, - strand, RNAz p=0.788621

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-337, - strand, RNAz p=0.788621

Predicted microRNA(s): 3 entry(ies)

More info

Predicted microRNA(s): 3 entry(ies)

Help | Less info


               
               159-284, + strand, RNAmicro p=0.998662
               

               
               69-198, - strand, RNAmicro p=0.99662
               

               
               231-351, - strand, RNAmicro p=0.949318

Predicted microRNA(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               159-284, + strand, RNAmicro p=0.998662
               

               
               69-198, - strand, RNAmicro p=0.99662
               

               
               231-351, - strand, RNAmicro p=0.949318

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-483, gnl|bosTau2|chr27 (15777594-15778076)
               

               
               1-483, gnl|Hg17|chr8 (8271672-8271172)
               

               
               1-483, gnl|Mm7|chr8 (34869225-34869710)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-483, gnl|bosTau2|chr27 (15777594-15778076)
               

               
               1-483, gnl|Hg17|chr8 (8271672-8271172)
               

               
               1-483, gnl|Mm7|chr8 (34869225-34869710)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	159-284, + strand, RNAmicro p=0.998662
	69-198, - strand, RNAmicro p=0.99662
	231-351, - strand, RNAmicro p=0.949318

	1-483, gnl\|bosTau2\|chr27 (15777594-15778076)
	1-483, gnl\|Hg17\|chr8 (8271672-8271172)
	1-483, gnl\|Mm7\|chr8 (34869225-34869710)