Non-Coding RNA Search

rebs28c_o2.y1

Sequence:


               
               GGGGATGGGCTCTCAGTTAATATTAAGGGATGTGTTGAAAAGGCAAGTGCCCTCCCTTTC
TCTATTCACCACCCCACCCTCCCTTCCTTCCCAATCTCAAAAGAAAACAGAAAATTATTT
TTTTAAAGTGTATTAATAATTTATGTTTAATACAAAAAGGATGATTGAATGGTATCACCA
AAGGTCATTTCTCTCATTGTGCATGTCCTTCGCTCTCAGCCCCTTCCCCATCACCCCATT
CTCCACCCTCACACATCCATCCCAAGGCAAACCTGTCTTCATCGGAATCTATCAGTGTTG
GAGTTAATGTGGGGCAGAGATTTAACACCATGATACTAATGAAAACCAACCATTCTTCAC
TTTCAAATGGTTAGTCCTACAGGAAGGCAAACTCTTTCCTTGGTCTTTGCTTAAGAACAT
TTTATACATATATATGTATATATGTGTGTGTATGTATGGGCATATGTATGTATATGCACA
TGTACATGTATATATGTATATACCCATCTCCAATATAAATATATCATATGTGAGAGTTGT
AAATACTCCTGATCATATGTCTGTCTTCCTCATGGTATCATATCTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGATGGGCTCTCAGTTAATATTAAGGGATGTGTTGAAAAGGCAAGTGCCCTCCCTTTC
TCTATTCACCACCCCACCCTCCCTTCCTTCCCAATCTCAAAAGAAAACAGAAAATTATTT
TTTTAAAGTGTATTAATAATTTATGTTTAATACAAAAAGGATGATTGAATGGTATCACCA
AAGGTCATTTCTCTCATTGTGCATGTCCTTCGCTCTCAGCCCCTTCCCCATCACCCCATT
CTCCACCCTCACACATCCATCCCAAGGCAAACCTGTCTTCATCGGAATCTATCAGTGTTG
GAGTTAATGTGGGGCAGAGATTTAACACCATGATACTAATGAAAACCAACCATTCTTCAC
TTTCAAATGGTTAGTCCTACAGGAAGGCAAACTCTTTCCTTGGTCTTTGCTTAAGAACAT
TTTATACATATATATGTATATATGTGTGTGTATGTATGGGCATATGTATGTATATGCACA
TGTACATGTATATATGTATATACCCATCTCCAATATAAATATATCATATGTGAGAGTTGT
AAATACTCCTGATCATATGTCTGTCTTCCTCATGGTATCATATCTTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-553, + strand, RNAz p=0.990419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-553, + strand, RNAz p=0.990419

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               423-537, + strand, RNAmicro p=0.999848
               

               
               402-551, - strand, RNAmicro p=0.932846

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               423-537, + strand, RNAmicro p=0.999848
               

               
               402-551, - strand, RNAmicro p=0.932846

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               511-550, RVL1250 Wackym-Soares normalized rat vestibular cDNA library Rattus 
(gb|CX570130.1|), blast E-value=0.000000000003, identity=100% 
               

               
               511-550, RVL9396 Wackym-Soares normalized rat vestibular cDNA library Rattus 
(gb|DV718768.1|), blast E-value=0.000000000003, identity=100% 
               

               
               511-550, RVL16870 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV724791.1|), blast E-value=0.000000000003, identity=100% 
               

               
               511-550, RVL17623 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV725456.1|), blast E-value=0.000000000003, identity=100% 
               

               
               504-550, LB01115.CR.1_H16 GC_BGC-11 Bos taurus cDNA clone IMAGE 
(gb|DV837148.1|), blast E-value=2e-16, identity=100% 
               

               
               511-550, RVL24315 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DY472946.1|), blast E-value=0.000000000003, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               511-550, RVL1250 Wackym-Soares normalized rat vestibular cDNA library Rattus 
(gb|CX570130.1|), blast E-value=0.000000000003, identity=100% 
               

               
               511-550, RVL9396 Wackym-Soares normalized rat vestibular cDNA library Rattus 
(gb|DV718768.1|), blast E-value=0.000000000003, identity=100% 
               

               
               511-550, RVL16870 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV724791.1|), blast E-value=0.000000000003, identity=100% 
               

               
               511-550, RVL17623 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV725456.1|), blast E-value=0.000000000003, identity=100% 
               

               
               504-550, LB01115.CR.1_H16 GC_BGC-11 Bos taurus cDNA clone IMAGE 
(gb|DV837148.1|), blast E-value=2e-16, identity=100% 
               

               
               511-550, RVL24315 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DY472946.1|), blast E-value=0.000000000003, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-588, gnl|bosTau2|chr21 (13923656-13923067)
               

               
               1-588, gnl|Hg17|chr15 (86204683-86204095)
               

               
               1-588, gnl|Mm7|chr7 (74037183-74036603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr21 (13923656-13923067)
               

               
               1-588, gnl|Hg17|chr15 (86204683-86204095)
               

               
               1-588, gnl|Mm7|chr7 (74037183-74036603)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	423-537, + strand, RNAmicro p=0.999848
	402-551, - strand, RNAmicro p=0.932846

	511-550, RVL1250 Wackym-Soares normalized rat vestibular cDNA library Rattus (gb\|CX570130.1\|), blast E-value=0.000000000003, identity=100%
	511-550, RVL9396 Wackym-Soares normalized rat vestibular cDNA library Rattus (gb\|DV718768.1\|), blast E-value=0.000000000003, identity=100%
	511-550, RVL16870 Wackym-Soares normalized rat vestibular cDNA library (gb\|DV724791.1\|), blast E-value=0.000000000003, identity=100%
	511-550, RVL17623 Wackym-Soares normalized rat vestibular cDNA library (gb\|DV725456.1\|), blast E-value=0.000000000003, identity=100%
	504-550, LB01115.CR.1_H16 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb\|DV837148.1\|), blast E-value=2e-16, identity=100%
	511-550, RVL24315 Wackym-Soares normalized rat vestibular cDNA library (gb\|DY472946.1\|), blast E-value=0.000000000003, identity=100%

	1-588, gnl\|bosTau2\|chr21 (13923656-13923067)
	1-588, gnl\|Hg17\|chr15 (86204683-86204095)
	1-588, gnl\|Mm7\|chr7 (74037183-74036603)