Non-Coding RNA Search

rebs29c_p4.y1

Sequence:


               
               GGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCTGCGGCAGCTGCTGCCCGGGCGGCCTCCG
CCGGAGCCTCCTCCTGCACGGCGCGCGCAGCAAGCCCTACGCGTGCCCCGAGTGCGGCAA
GAGCTTCGGCGTGCGCAAGAGCCTCATCATCCACCACCGCAGCCACACCAAGGAGCGGCC
CTACGAGTGCGCCGAGTGCGAGAAGAGCTTCAACTGCCACTCGGGCCTCATCCGCCACCA
GATGACGCACCGCGGCGAGCGGCCCTACAAGTGCTCCGAGTGCGAGAAGACGTACAGCCG
CAAGGAGCACCTGCAGAACCACCAGCGGCTGCACACGGGCGAGCGGCCCTTCCAGTGCGC
GCTCTGCGGCAAGAGCTTCATCCGCAAGCAGAACCTGCTCAAGCACCAGCGCATCCACAC
GGGCGAGCGGCCCTACACGTGCGGCGAGTGCAGCAAGAGCTTCCGCTACAAGGAGTCGCT
CAAGGACCACCTGCGCGTGCACAGCGGTGGCCCGGGCCTCGGCGCCCCGCGGCCCCTCCA
GGCGCCGCCCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCTGCGGCAGCTGCTGCCCGGGCGGCCTCCG
CCGGAGCCTCCTCCTGCACGGCGCGCGCAGCAAGCCCTACGCGTGCCCCGAGTGCGGCAA
GAGCTTCGGCGTGCGCAAGAGCCTCATCATCCACCACCGCAGCCACACCAAGGAGCGGCC
CTACGAGTGCGCCGAGTGCGAGAAGAGCTTCAACTGCCACTCGGGCCTCATCCGCCACCA
GATGACGCACCGCGGCGAGCGGCCCTACAAGTGCTCCGAGTGCGAGAAGACGTACAGCCG
CAAGGAGCACCTGCAGAACCACCAGCGGCTGCACACGGGCGAGCGGCCCTTCCAGTGCGC
GCTCTGCGGCAAGAGCTTCATCCGCAAGCAGAACCTGCTCAAGCACCAGCGCATCCACAC
GGGCGAGCGGCCCTACACGTGCGGCGAGTGCAGCAAGAGCTTCCGCTACAAGGAGTCGCT
CAAGGACCACCTGCGCGTGCACAGCGGTGGCCCGGGCCTCGGCGCCCCGCGGCCCCTCCA
GGCGCCGCCCGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               362-519, - strand, RNAz p=0.842649

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-519, - strand, RNAz p=0.842649

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               83-529, gnl|bosTau2|chr25 (3663925-3664372)
               

               
               83-529, gnl|Hg17|chr16 (3109569-3110016)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-529, gnl|bosTau2|chr25 (3663925-3664372)
               

               
               83-529, gnl|Hg17|chr16 (3109569-3110016)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	83-529, gnl\|bosTau2\|chr25 (3663925-3664372)
	83-529, gnl\|Hg17\|chr16 (3109569-3110016)