Non-Coding RNA Search

rebs30c_a3.y1

Sequence:


               
               CAAAAGTAGCAGTAGAGGGTTATGGTCTCATAGTAAAGAAGAAAACACAGCAAGGATAGC
ACCAGAGGATAACTGATCTCTAGTAGCCACCATCGAAATGTCCAGAGTCTTCAACTTTTA
GAATTGGAAATAATTCTAAAAGGTAGGGTAGAATTTAAAAAAAAGGATGGAAAGTTATTC
TTCATTTCATTGACCACACATACAAGTGAGTTGTCTATATTTGTGACACATTAGTTATGG
AAAATTACTCTATCTCTTCTACTTTTAGTCTAGCTGTTTAGTCATATATCATTTCAAAAA
TAGGATTTTTTTTTCTTGGATTGTTTGCACTGAGTATTGTGTGTGTCTGTCAGTGTCTTT
GTTTGTAGCTTATTAAAAAGGCACCTTATCCTTTTTACCATAAGCTTTCAACACTAGAAA
ATGAGAAATAATCTAGGATGCTTCTAAGAATAGCATTCTTACTATGATACATGAAAAGTT
AACTTTATAATGAGGTGACTTAAGATTTAATTTACAGGTTTTTAATGTCAGTGTGGAAAT
TATTTGTGATTCTGAAAACATTGTATGATACATAGTCAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGTAGCAGTAGAGGGTTATGGTCTCATAGTAAAGAAGAAAACACAGCAAGGATAGC
ACCAGAGGATAACTGATCTCTAGTAGCCACCATCGAAATGTCCAGAGTCTTCAACTTTTA
GAATTGGAAATAATTCTAAAAGGTAGGGTAGAATTTAAAAAAAAGGATGGAAAGTTATTC
TTCATTTCATTGACCACACATACAAGTGAGTTGTCTATATTTGTGACACATTAGTTATGG
AAAATTACTCTATCTCTTCTACTTTTAGTCTAGCTGTTTAGTCATATATCATTTCAAAAA
TAGGATTTTTTTTTCTTGGATTGTTTGCACTGAGTATTGTGTGTGTCTGTCAGTGTCTTT
GTTTGTAGCTTATTAAAAAGGCACCTTATCCTTTTTACCATAAGCTTTCAACACTAGAAA
ATGAGAAATAATCTAGGATGCTTCTAAGAATAGCATTCTTACTATGATACATGAAAAGTT
AACTTTATAATGAGGTGACTTAAGATTTAATTTACAGGTTTTTAATGTCAGTGTGGAAAT
TATTTGTGATTCTGAAAACATTGTATGATACATAGTCAATCT

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               113-570, gnl|bosTau2|chr14 (1821721-1821253)
               

               
               113-570, gnl|canFam2|chr37 (31930996-31931352)
               

               
               113-570, gnl|dasNov1|scaffold_22682 (12707-12351)
               

               
               113-570, gnl|hg17|chr2 (223632595-223632950)
               

               
               113-570, gnl|Hg17|chr2 (223632684-223633132)
               

               
               113-570, gnl|loxAfr1|scaffold_75922 (8963-9322)
               

               
               113-570, gnl|monDom2|scaffold_28 (3808273-3808659)
               

               
               113-570, gnl|oryCun1|scaffold_212432 (104291-104633)
               

               
               113-570, gnl|panTro1|chr13 (114213717-114214070)
               

               
               113-570, gnl|rheMac2|chr12 (86822357-86822699)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-570, gnl|bosTau2|chr14 (1821721-1821253)
               

               
               113-570, gnl|canFam2|chr37 (31930996-31931352)
               

               
               113-570, gnl|dasNov1|scaffold_22682 (12707-12351)
               

               
               113-570, gnl|hg17|chr2 (223632595-223632950)
               

               
               113-570, gnl|Hg17|chr2 (223632684-223633132)
               

               
               113-570, gnl|loxAfr1|scaffold_75922 (8963-9322)
               

               
               113-570, gnl|monDom2|scaffold_28 (3808273-3808659)
               

               
               113-570, gnl|oryCun1|scaffold_212432 (104291-104633)
               

               
               113-570, gnl|panTro1|chr13 (114213717-114214070)
               

               
               113-570, gnl|rheMac2|chr12 (86822357-86822699)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	113-570, gnl\|bosTau2\|chr14 (1821721-1821253)
	113-570, gnl\|canFam2\|chr37 (31930996-31931352)
	113-570, gnl\|dasNov1\|scaffold_22682 (12707-12351)
	113-570, gnl\|hg17\|chr2 (223632595-223632950)
	113-570, gnl\|Hg17\|chr2 (223632684-223633132)
	113-570, gnl\|loxAfr1\|scaffold_75922 (8963-9322)
	113-570, gnl\|monDom2\|scaffold_28 (3808273-3808659)
	113-570, gnl\|oryCun1\|scaffold_212432 (104291-104633)
	113-570, gnl\|panTro1\|chr13 (114213717-114214070)
	113-570, gnl\|rheMac2\|chr12 (86822357-86822699)