Non-Coding RNA Search

rebs30c_c3.y1

Sequence:


               
               GTTTGAGTGGGAACCATCAAATGTGTGTGGGCTGCCTTCCCAGGCAAGTGTTTCCCAGTG
GGAAGTCGGAGGAGGGCTTTTAAAAAGGTTTCACACCCTCCCTTGGTCCCCTAATCTAGT
GCTCAGGATCCCTCACCATCAGGAATTCCTTCTTGCCATCTAACCTCAATCCTGCCTACT
GCAGTCGCAGCCAACTTCCCTCTCTCCTGAATTCAGTGGAGGTGGAGAATGGCTGGTTAT
CATCTCTGTGCCGGCCTTTTGGAGATTCAGGGACTCAGTTCTGGAGGGGTCACCTTCCGT
GTCCTCCAGGCTGTGGGGAATGGGCAGGATCAGGCCATCATCTCCCGCAGTGGGCAGAGA
GAGCAGAAACAGACAGACAGAGAGCTGGCCCCTGGACTCAAGGCAGAAAGGCCCTTCTAA
CTTCCAGATTGTATGATGCTTGTGTGACAGGTCCAGCCCCAGTCCCCAGCACCCCAGCTT
ACCCTTCAGCCTATCCCCTTTTGTTCTAATCCCAACCTATGCAGCTGAGCAGTCCCTTCA
GAGGGTGAGGGCTGTGCGGCTCCATGAATGGATATAGGGCCTCCTCCTGGGTCTGGCTCC
TGCATTGCTCATCCCAACTCATTATCAGCCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGAGTGGGAACCATCAAATGTGTGTGGGCTGCCTTCCCAGGCAAGTGTTTCCCAGTG
GGAAGTCGGAGGAGGGCTTTTAAAAAGGTTTCACACCCTCCCTTGGTCCCCTAATCTAGT
GCTCAGGATCCCTCACCATCAGGAATTCCTTCTTGCCATCTAACCTCAATCCTGCCTACT
GCAGTCGCAGCCAACTTCCCTCTCTCCTGAATTCAGTGGAGGTGGAGAATGGCTGGTTAT
CATCTCTGTGCCGGCCTTTTGGAGATTCAGGGACTCAGTTCTGGAGGGGTCACCTTCCGT
GTCCTCCAGGCTGTGGGGAATGGGCAGGATCAGGCCATCATCTCCCGCAGTGGGCAGAGA
GAGCAGAAACAGACAGACAGAGAGCTGGCCCCTGGACTCAAGGCAGAAAGGCCCTTCTAA
CTTCCAGATTGTATGATGCTTGTGTGACAGGTCCAGCCCCAGTCCCCAGCACCCCAGCTT
ACCCTTCAGCCTATCCCCTTTTGTTCTAATCCCAACCTATGCAGCTGAGCAGTCCCTTCA
GAGGGTGAGGGCTGTGCGGCTCCATGAATGGATATAGGGCCTCCTCCTGGGTCTGGCTCC
TGCATTGCTCATCCCAACTCATTATCAGCCTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-249, + strand, RNAz p=0.952608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-249, + strand, RNAz p=0.952608

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB058758, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB058758, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-634, gnl|bosTau2|chr23 (17154988-17155639)
               

               
               1-634, gnl|Hg17|chr6 (43361875-43362493)
               

               
               1-634, gnl|Mm7|chr17 (44573184-44572611)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-634, gnl|bosTau2|chr23 (17154988-17155639)
               

               
               1-634, gnl|Hg17|chr6 (43361875-43362493)
               

               
               1-634, gnl|Mm7|chr17 (44573184-44572611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-634, gnl\|bosTau2\|chr23 (17154988-17155639)
	1-634, gnl\|Hg17\|chr6 (43361875-43362493)
	1-634, gnl\|Mm7\|chr17 (44573184-44572611)