Non-Coding RNA Search

rebs35c_d21.y1

Sequence:


               
               GGTAAACGACCTGCGGGCCCTGGTTGAAGACCCCCGGTTGAACCTCAAGGTCATCCAGCT
GGTCCGAGACCCGCGTGGCATCCTGGCTTCCCGCAGCGAGACCTTCCGCGACACGTACCG
GCTCTGGCGGCTCTGGTACGGCACCGGGAGGAAGCCCTACAACCTGGACGTGACGCAGCT
GACCACGGTGTGCGAGGACTTCTCCAACTCCGTGTCCACCGGCCTCATGCGGCCCGCGTG
GCTCAAGGGCAAGTACATGTTGGTGCGCTACGAGGACCTGGCCAGGAACCCCATGAAGAA
GACCGAGGAGATCTACGGTTTCCTGGGCATCCCCTTGGACAGCCACGTGGCGCGCTGGAT
CCAGAACAACACGCGGGGCGACCCCACCTTGGGCAAGCACAAATACGGCACCGTGCGCAA
CTCGGCGGCCACAGCCGAGAAGTGGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTTGC
CCAGAACGCCTGTCAGCGGGTACTGGCGCAGCTGGGCTACAAGATGGCCAGCTCCGAGGA
GGAGCTCAAAAACCCTTCCATCAGCCTGGTGGAGGAGCGGGACTTCCGCCCCTTCTCGTG
ACCGGGGCTGCGTGGTGGGGGCGAGGAGCACATGGTGTCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAAACGACCTGCGGGCCCTGGTTGAAGACCCCCGGTTGAACCTCAAGGTCATCCAGCT
GGTCCGAGACCCGCGTGGCATCCTGGCTTCCCGCAGCGAGACCTTCCGCGACACGTACCG
GCTCTGGCGGCTCTGGTACGGCACCGGGAGGAAGCCCTACAACCTGGACGTGACGCAGCT
GACCACGGTGTGCGAGGACTTCTCCAACTCCGTGTCCACCGGCCTCATGCGGCCCGCGTG
GCTCAAGGGCAAGTACATGTTGGTGCGCTACGAGGACCTGGCCAGGAACCCCATGAAGAA
GACCGAGGAGATCTACGGTTTCCTGGGCATCCCCTTGGACAGCCACGTGGCGCGCTGGAT
CCAGAACAACACGCGGGGCGACCCCACCTTGGGCAAGCACAAATACGGCACCGTGCGCAA
CTCGGCGGCCACAGCCGAGAAGTGGCGCTTCCGCCTCTCCTACGACATCGTGGCCTTTGC
CCAGAACGCCTGTCAGCGGGTACTGGCGCAGCTGGGCTACAAGATGGCCAGCTCCGAGGA
GGAGCTCAAAAACCCTTCCATCAGCCTGGTGGAGGAGCGGGACTTCCGCCCCTTCTCGTG
ACCGGGGCTGCGTGGTGGGGGCGAGGAGCACATGGTGTCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26373893|dbj|BAB27556.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26373893|dbj|BAB27556.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-599, - strand, RNAz p=0.985916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-599, - strand, RNAz p=0.985916

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-641, gnl|bosTau2|chr15 (47495288-47494647)
               

               
               1-641, gnl|Hg17|chr11 (45628414-45627773)
               

               
               1-641, gnl|Mm7|chr2 (92464536-92465173)
               


               
               10-579, gnl|bosTau2|chr12 (34426153-34425590)
               

               
               10-579, gnl|Hg17|chr10 (73437641-73438213)
               

               
               10-579, gnl|Mm7|chr10 (59704391-59703822)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-641, gnl|bosTau2|chr15 (47495288-47494647)
               

               
               1-641, gnl|Hg17|chr11 (45628414-45627773)
               

               
               1-641, gnl|Mm7|chr2 (92464536-92465173)
               


               
               10-579, gnl|bosTau2|chr12 (34426153-34425590)
               

               
               10-579, gnl|Hg17|chr10 (73437641-73438213)
               

               
               10-579, gnl|Mm7|chr10 (59704391-59703822)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-641, gnl\|bosTau2\|chr15 (47495288-47494647)
	1-641, gnl\|Hg17\|chr11 (45628414-45627773)
	1-641, gnl\|Mm7\|chr2 (92464536-92465173)

	10-579, gnl\|bosTau2\|chr12 (34426153-34425590)
	10-579, gnl\|Hg17\|chr10 (73437641-73438213)
	10-579, gnl\|Mm7\|chr10 (59704391-59703822)