Non-Coding RNA Search

recc2802c_j1.y1

Sequence:


               
               CCAGCGCGGGCACAGAGCCTCCCACCTCCAGGAACCTACGCCCGGGAGAAGAGCGAGCGC
AGTGACAGCGCCTCGCCGCCACCAGTCCCCAGACCACCAGGGCGAAGAGCCGCAAGGACA
GAAACAGTGGGGGTGGGTTTTCAGAAAAGGGATATGAATGGAGCTCAGAAGAGGAAGAGT
CAGTGAAAAAGGCAGGACCAGTCCAAGTCCTCATGGTCAAAGATGACCATTCCTTTGAAT
TAGATGAAACTGCACTAAATCGGATCCTTCTTTCGGAGGCTGTCAGGGACAAGGAGGTCG
TTGCAGTATCTGTGGCTGGAGCATTTAGAAAAGGAAAATCATTCCTGATGGATTTCATGT
TGAGATACATGTACAACCAGGAGTCTGTTGATGGGGTTGGAGATTACAATGAGCCATTGA
CTGGTTTTTCATGGAGAGGTGGATCTGAACGAGAGACCACAGGAATCCAGATATGGAGTG
AAGTCTTCCTTATCAATAAACCTGATGGTAAAAAGGTTGCAGTGCTGTTGATGGATACTC
AGGGAACCTTTGACAGTCAGTCAACTTTGAGAGATTCGGCCACAGTATTGGCCCTTAGCA
CAATGATCAGCTCAATACAGGTATATAACTTATCACAAAATGTCCAGGAGGATGATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCGCGGGCACAGAGCCTCCCACCTCCAGGAACCTACGCCCGGGAGAAGAGCGAGCGC
AGTGACAGCGCCTCGCCGCCACCAGTCCCCAGACCACCAGGGCGAAGAGCCGCAAGGACA
GAAACAGTGGGGGTGGGTTTTCAGAAAAGGGATATGAATGGAGCTCAGAAGAGGAAGAGT
CAGTGAAAAAGGCAGGACCAGTCCAAGTCCTCATGGTCAAAGATGACCATTCCTTTGAAT
TAGATGAAACTGCACTAAATCGGATCCTTCTTTCGGAGGCTGTCAGGGACAAGGAGGTCG
TTGCAGTATCTGTGGCTGGAGCATTTAGAAAAGGAAAATCATTCCTGATGGATTTCATGT
TGAGATACATGTACAACCAGGAGTCTGTTGATGGGGTTGGAGATTACAATGAGCCATTGA
CTGGTTTTTCATGGAGAGGTGGATCTGAACGAGAGACCACAGGAATCCAGATATGGAGTG
AAGTCTTCCTTATCAATAAACCTGATGGTAAAAAGGTTGCAGTGCTGTTGATGGATACTC
AGGGAACCTTTGACAGTCAGTCAACTTTGAGAGATTCGGCCACAGTATTGGCCCTTAGCA
CAATGATCAGCTCAATACAGGTATATAACTTATCACAAAATGTCCAGGAGGATGATCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               132-250, - strand, RNAz p=0.57884
               

               
               262-381, + strand, RNAz p=0.565327

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-250, - strand, RNAz p=0.57884
               

               
               262-381, + strand, RNAz p=0.565327

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               132-381, gnl|bosTau2|chr10 (29005706-29005955)
               

               
               132-381, gnl|Hg17|chr14 (50124298-50124547)
               

               
               132-381, gnl|Mm7|chr12 (67866933-67867182)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-381, gnl|bosTau2|chr10 (29005706-29005955)
               

               
               132-381, gnl|Hg17|chr14 (50124298-50124547)
               

               
               132-381, gnl|Mm7|chr12 (67866933-67867182)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	132-250, - strand, RNAz p=0.57884
	262-381, + strand, RNAz p=0.565327

	132-381, gnl\|bosTau2\|chr10 (29005706-29005955)
	132-381, gnl\|Hg17\|chr14 (50124298-50124547)
	132-381, gnl\|Mm7\|chr12 (67866933-67867182)