Non-Coding RNA Search

recc2803c_a13.y1

Sequence:


               
               CGGAAGGGTAAGAGATAACGTTATGATTGCGAATCAGAGCCTCTCAAATTGAAGTGGTAG
AGCGATTAAAAAAAAAAAAAAAGCTTTATCAAGCCAAATGTATTTGGTGTGATTTCTGCT
ATTTCCTTCTGGTGTGTATCAGGACATTTCAGAAAGCTTTAGTCCTGAGAGATTTAAATA
TTTTTCAAATCACAGTTTTAACTTAGAGCCCAGCCGCATGAAGGAGTTAAAGAGCTACAG
CTATCTCTCAAAGCGTTCCATTAATCAACTAACAAATGTCACCATCAGCTCTTGCCAAGC
AGTTTCTGATGTGTCTGCCAAAGGGGAAAAAAATAAGACTCTGAGCCGTATTACAATAAA
GATAATAATGCAAACAAAGATTCCTAAGCTTGAGTCATAAAGAGGTTGTAAAGATTAGGA
AGGCAAAAGTTTAATGATGTACACTGCCTTGTTTAAATCCTTATGTACGGTTTACTCCCA
TCTGAGCTTTTTTTTAAAAAAAACTCAATAAGAGATATACTAATGACACTGGAAATGTAT
TATACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAAGGGTAAGAGATAACGTTATGATTGCGAATCAGAGCCTCTCAAATTGAAGTGGTAG
AGCGATTAAAAAAAAAAAAAAAGCTTTATCAAGCCAAATGTATTTGGTGTGATTTCTGCT
ATTTCCTTCTGGTGTGTATCAGGACATTTCAGAAAGCTTTAGTCCTGAGAGATTTAAATA
TTTTTCAAATCACAGTTTTAACTTAGAGCCCAGCCGCATGAAGGAGTTAAAGAGCTACAG
CTATCTCTCAAAGCGTTCCATTAATCAACTAACAAATGTCACCATCAGCTCTTGCCAAGC
AGTTTCTGATGTGTCTGCCAAAGGGGAAAAAAATAAGACTCTGAGCCGTATTACAATAAA
GATAATAATGCAAACAAAGATTCCTAAGCTTGAGTCATAAAGAGGTTGTAAAGATTAGGA
AGGCAAAAGTTTAATGATGTACACTGCCTTGTTTAAATCCTTATGTACGGTTTACTCCCA
TCTGAGCTTTTTTTTAAAAAAAACTCAATAAGAGATATACTAATGACACTGGAAATGTAT
TATACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-227, - strand, RNAz p=0.580571

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-227, - strand, RNAz p=0.580571

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-547, gnl|bosTau2|chrX (16505479-16504928)
               

               
               4-547, gnl|canFam2|chrX (80297094-80297909)
               

               
               4-547, gnl|dasNov1|scaffold_74987 (1025-210)
               

               
               4-547, gnl|echTel1|scaffold_287331 (45298-46134)
               

               
               4-547, gnl|hg17|chrX (102885124-102885952)
               

               
               4-547, gnl|Hg17|chrX (102886159-102885601)
               

               
               4-547, gnl|loxAfr1|scaffold_24742 (14777-15620)
               

               
               4-547, gnl|mm7|chrX (131578988-131579806)
               

               
               4-547, gnl|Mm7|chrX (131579992-131579482)
               

               
               4-547, gnl|monDom2|scaffold_146 (1317571-1316780)
               

               
               4-547, gnl|oryCun1|scaffold_198289 (157092-157913)
               

               
               4-547, gnl|panTro1|chrX (106411049-106411948)
               

               
               4-547, gnl|rheMac2|chrX (102378918-102379747)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-547, gnl|bosTau2|chrX (16505479-16504928)
               

               
               4-547, gnl|canFam2|chrX (80297094-80297909)
               

               
               4-547, gnl|dasNov1|scaffold_74987 (1025-210)
               

               
               4-547, gnl|echTel1|scaffold_287331 (45298-46134)
               

               
               4-547, gnl|hg17|chrX (102885124-102885952)
               

               
               4-547, gnl|Hg17|chrX (102886159-102885601)
               

               
               4-547, gnl|loxAfr1|scaffold_24742 (14777-15620)
               

               
               4-547, gnl|mm7|chrX (131578988-131579806)
               

               
               4-547, gnl|Mm7|chrX (131579992-131579482)
               

               
               4-547, gnl|monDom2|scaffold_146 (1317571-1316780)
               

               
               4-547, gnl|oryCun1|scaffold_198289 (157092-157913)
               

               
               4-547, gnl|panTro1|chrX (106411049-106411948)
               

               
               4-547, gnl|rheMac2|chrX (102378918-102379747)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	4-547, gnl\|bosTau2\|chrX (16505479-16504928)
	4-547, gnl\|canFam2\|chrX (80297094-80297909)
	4-547, gnl\|dasNov1\|scaffold_74987 (1025-210)
	4-547, gnl\|echTel1\|scaffold_287331 (45298-46134)
	4-547, gnl\|hg17\|chrX (102885124-102885952)
	4-547, gnl\|Hg17\|chrX (102886159-102885601)
	4-547, gnl\|loxAfr1\|scaffold_24742 (14777-15620)
	4-547, gnl\|mm7\|chrX (131578988-131579806)
	4-547, gnl\|Mm7\|chrX (131579992-131579482)
	4-547, gnl\|monDom2\|scaffold_146 (1317571-1316780)
	4-547, gnl\|oryCun1\|scaffold_198289 (157092-157913)
	4-547, gnl\|panTro1\|chrX (106411049-106411948)
	4-547, gnl\|rheMac2\|chrX (102378918-102379747)