Non-Coding RNA Search

recc2804c_k19.y1

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTCCCCACTGCGGTTATTTTGGTTTAATGCTACCTATATCTG
CCTAATTAGTTTTATCTACTCCATGTGGATGCAGTGAGTTTTTAAGAGAATTTCACAAAC
AAGTAGTTTTTTAGTGAACTTAGAATTTTAAAGGAGACCTATTTTTATACTCAGTAAAAG
CACAAACGTGCAGAAAGTATAAAATGGCTTACAAAGGGAAACATACGTTCTTAATGTTCC
ATGTATAAAAGTAATAATTTTCTTGGGTAGAGATACTCTGAAAAGATTCAATACCTCTGC
CAGTGCACAGATAGGACTGTTTTCCGTGACTCGGGAACTTCTGTCGCAAACAGATCACTG
CTCTGTAGAGAAAACAAACCACTAAGAGCAATAGGGTCAAGCTGAGATGTGGTTGGGTGT
GAGCGATCGGTGAACAGAGACAACGCAGAGGGGCAGACACGGGGGCTTCTCAAAGGTTTG
ACCAAACTTCTTTGACGTAGACACACAGACCTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTCCCCACTGCGGTTATTTTGGTTTAATGCTACCTATATCTG
CCTAATTAGTTTTATCTACTCCATGTGGATGCAGTGAGTTTTTAAGAGAATTTCACAAAC
AAGTAGTTTTTTAGTGAACTTAGAATTTTAAAGGAGACCTATTTTTATACTCAGTAAAAG
CACAAACGTGCAGAAAGTATAAAATGGCTTACAAAGGGAAACATACGTTCTTAATGTTCC
ATGTATAAAAGTAATAATTTTCTTGGGTAGAGATACTCTGAAAAGATTCAATACCTCTGC
CAGTGCACAGATAGGACTGTTTTCCGTGACTCGGGAACTTCTGTCGCAAACAGATCACTG
CTCTGTAGAGAAAACAAACCACTAAGAGCAATAGGGTCAAGCTGAGATGTGGTTGGGTGT
GAGCGATCGGTGAACAGAGACAACGCAGAGGGGCAGACACGGGGGCTTCTCAAAGGTTTG
ACCAAACTTCTTTGACGTAGACACACAGACCTGGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               148-266, + strand, RNAz p=0.652938

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-266, + strand, RNAz p=0.652938

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_003108, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003108, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               7-516, gnl|bosTau2|chr11 (71463684-71463165)
               

               
               7-516, gnl|Hg17|chr2 (5790477-5791002)
               

               
               7-516, gnl|Mm7|chr12 (25172579-25172070)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-516, gnl|bosTau2|chr11 (71463684-71463165)
               

               
               7-516, gnl|Hg17|chr2 (5790477-5791002)
               

               
               7-516, gnl|Mm7|chr12 (25172579-25172070)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	7-516, gnl\|bosTau2\|chr11 (71463684-71463165)
	7-516, gnl\|Hg17\|chr2 (5790477-5791002)
	7-516, gnl\|Mm7\|chr12 (25172579-25172070)