Non-Coding RNA Search

recc2805c_c6.y1

Sequence:


               
               TATCACAAGCACTTAGAATAGAAAGCATTTAGTAAATGCCGGATATGCATTTAACCAGAA
AAGACATGTGTAATGACTTGCCATACGGCTATTACCTAAACCTGTCCCATTTGACATTTT
TATCCAAAATCCAAATAAAGATATAAGAATTTTAGTTAAGGATAACCCAAACCTGGAAAA
GAGAGAGCCAGCATATTGAATAGCAGAATCATACTAACAAAAGACCTTGCTAGGCTTAAA
GATAATGGAAGCTACTATGGTAAAGTTTAATAACAATACAGGGAAATCCTCTCAAGTTCA
GTCAGTTGTACCTGCTTAAATAAAGATTGTgggagttcccttgtggcacagtaggttaag
gatctggcattgtcccttcagtggtccagcttgctgctgtggcacaggtttgatccctgg
cccaggaacttccGTATACCATGTGTGCAGCCAAAAAAGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCACAAGCACTTAGAATAGAAAGCATTTAGTAAATGCCGGATATGCATTTAACCAGAA
AAGACATGTGTAATGACTTGCCATACGGCTATTACCTAAACCTGTCCCATTTGACATTTT
TATCCAAAATCCAAATAAAGATATAAGAATTTTAGTTAAGGATAACCCAAACCTGGAAAA
GAGAGAGCCAGCATATTGAATAGCAGAATCATACTAACAAAAGACCTTGCTAGGCTTAAA
GATAATGGAAGCTACTATGGTAAAGTTTAATAACAATACAGGGAAATCCTCTCAAGTTCA
GTCAGTTGTACCTGCTTAAATAAAGATTGTgggagttcccttgtggcacagtaggttaag
gatctggcattgtcccttcagtggtccagcttgctgctgtggcacaggtttgatccctgg
cccaggaacttccGTATACCATGTGTGCAGCCAAAAAAGAAAAAAAAAAAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-273, gnl|bosTau2|chr21 (30306274-30306004)
               

               
               1-273, gnl|canFam2|chr8 (17261606-17261907)
               

               
               1-273, gnl|dasNov1|scaffold_74836 (8075-8352)
               

               
               1-273, gnl|hg17|chr14 (35115286-35115563)
               

               
               1-273, gnl|Hg17|chr14 (35115625-35115339)
               

               
               1-273, gnl|loxAfr1|scaffold_16356 (56310-56008)
               

               
               1-273, gnl|mm7|chr12 (53572212-53572470)
               

               
               1-273, gnl|Mm7|chr12 (53572529-53572267)
               

               
               1-273, gnl|oryCun1|scaffold_178393 (52564-52856)
               

               
               1-273, gnl|panTro1|chr15 (34279725-34280002)
               

               
               1-273, gnl|rn3|chr6 (75901452-75901725)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-273, gnl|bosTau2|chr21 (30306274-30306004)
               

               
               1-273, gnl|canFam2|chr8 (17261606-17261907)
               

               
               1-273, gnl|dasNov1|scaffold_74836 (8075-8352)
               

               
               1-273, gnl|hg17|chr14 (35115286-35115563)
               

               
               1-273, gnl|Hg17|chr14 (35115625-35115339)
               

               
               1-273, gnl|loxAfr1|scaffold_16356 (56310-56008)
               

               
               1-273, gnl|mm7|chr12 (53572212-53572470)
               

               
               1-273, gnl|Mm7|chr12 (53572529-53572267)
               

               
               1-273, gnl|oryCun1|scaffold_178393 (52564-52856)
               

               
               1-273, gnl|panTro1|chr15 (34279725-34280002)
               

               
               1-273, gnl|rn3|chr6 (75901452-75901725)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-273, gnl\|bosTau2\|chr21 (30306274-30306004)
	1-273, gnl\|canFam2\|chr8 (17261606-17261907)
	1-273, gnl\|dasNov1\|scaffold_74836 (8075-8352)
	1-273, gnl\|hg17\|chr14 (35115286-35115563)
	1-273, gnl\|Hg17\|chr14 (35115625-35115339)
	1-273, gnl\|loxAfr1\|scaffold_16356 (56310-56008)
	1-273, gnl\|mm7\|chr12 (53572212-53572470)
	1-273, gnl\|Mm7\|chr12 (53572529-53572267)
	1-273, gnl\|oryCun1\|scaffold_178393 (52564-52856)
	1-273, gnl\|panTro1\|chr15 (34279725-34280002)
	1-273, gnl\|rn3\|chr6 (75901452-75901725)